LOCUS       NM_001290510            2144 bp    mRNA    linear   ROD 09-JUN-2024
DEFINITION  Mus musculus leucine-rich repeats and IQ motif containing 4
            (Lrriq4), transcript variant 2, mRNA.
ACCESSION   NM_001290510 XM_006535532
VERSION     NM_001290510.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2144)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2144)
  AUTHORS   Hansen,G.M., Markesich,D.C., Burnett,M.B., Zhu,Q., Dionne,K.M.,
            Richter,L.J., Finnell,R.H., Sands,A.T., Zambrowicz,B.P. and
            Abuin,A.
  TITLE     Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
  JOURNAL   Genome Res 18 (10), 1670-1679 (2008)
   PUBMED   18799693
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC120377.25.
            
            On Dec 6, 2019 this sequence version replaced NM_001290510.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK015024.1, SRR5189685.147647.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-292               AC120377.25        56744-57035         c
            293-1340            AC120377.25        54052-55099         c
            1341-1514           AC120377.25        49194-49367         c
            1515-1653           AC120377.25        45812-45950         c
            1654-1850           AC120377.25        44907-45103         c
            1851-2144           AC120377.25        32570-32863         c
FEATURES             Location/Qualifiers
     source          1..2144
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 14.27 cM"
     gene            1..2144
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /note="leucine-rich repeats and IQ motif containing 4"
                     /db_xref="GeneID:68307"
                     /db_xref="MGI:MGI:1915557"
     exon            1..292
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            293..1340
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1514
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1515..1653
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1654..1850
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1851..2144
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2119..2124
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2144
                     /gene="Lrriq4"
                     /gene_synonym="4930558O21Rik"
                     /note="major polyA site"
ORIGIN      
        1 atcactttaa gcctatccgc tctaggttac acattctgat ggtggagctt cgagggttta
       61 ggagcctcat ctgctgggct agggactagg actacaaacc ctggtgaccc agcctgtctc
      121 accttttccg aagggctaag ctcggaatct aatggtagaa cctccaagtg tgtagtagtt
      181 taaaggattt tttttttgaa ggggtagagc cccctggaag agtttccttg agaaggcgac
      241 ttccagacta atctgagatg gcctatccca gtgccaagct gcagatgcac agatttgaca
      301 taattgacac cttcaaaacc ctgaccaagg aactactgag acaagaacat ttacccaagg
      361 ttcttcagaa aaaagaaccc caccagctca ctgatagaac atttttcatt gatggttcca
      421 accaggggtt gaagaccatc ccgtcagaga ttttggcatt aaaagaatta gaagaagtgc
      481 atctggagaa taaccagatt gcagaaattc cccagggcat tcagcagtta cagaacacca
      541 aggttctcta cctgcataac aacagcctgc aagatctgtg cccggagctg ggggcgctga
      601 gcagcctgga gtcgctggac ctgagcggca acccgctggt catctcctcg ctgcacgtcg
      661 tcagccgcct ccgcaccctt cgcgagctgc ggctctaccg cactggcctg accgagattc
      721 ccaccggcat ttgcaaatcc ctgcatcacc tggagctgtt cggtctgtca gagaacttcc
      781 tggaatcgct gcccgaggaa atcgtgaacc aaaccaagct cagggagatc tacctgaagc
      841 agaatcactt cgaggttttc ccttgcgacc tctgtgtcct ctacaacctg gaggtgatcg
      901 acctggacga aaacaagctg aagagcatcc ccggagatat cgggcacctg gtgaggctgc
      961 agaagttcta cgtggcgtct aaccacctga tgagtttacc ggagtctctg agtcagtgca
     1021 gcaagctgtc agtgctggat ttgacccaca actctatcca ctccctgccg tcctccctgg
     1081 agcttctcac cgagctcacg gaggtagggc tgagcgggaa ccggctggag aaggtgccgc
     1141 gcctcctctg cagctgggtg tcgctgcatc tgctgtacct gcgcaacacc agcctgcacg
     1201 ggctgcggga ctccttcaag cgcctgatca acctgcgctt cctggacctc agtcagaacc
     1261 acatagaaca ctttcccgtg cagatttgcg cgctcaagaa cctggagatc ctggcgctag
     1321 atgataacaa agtgaggcag ttaccaccga gcataagctt gctttcaaac ctgaagatac
     1381 tcgggctcac aggaaatgac cttttgtcct tcccagagga aatcttttcc ttaatatctc
     1441 tggagaaatt atatattgga caagaccagg ggtccaagct ttcatctttg ccagaaaaca
     1501 tcaagagatt gatgaatctt aaggaactat acatagagaa caaccgactg gaacagctgc
     1561 cagcatcctt ggggttaatg ccaaatctgg aagttcttga ctgtcggcat aatcttctta
     1621 agcaactccc agatgccatt tgccgtactc gaaatttgag agagctgctg ctggaagaca
     1681 acttactctg ctgcctccca gagaaccttg atcacctggt aaatcttaag gtcctaacac
     1741 tgatgaacaa ccccatggtc gaccctccca tatatgtgtg taaccaaggc aatgaagcca
     1801 tatggaaaca cctgaaggag aacagaatta ggaaaatgat ggccaccacg attcaggcat
     1861 ggtggcgtgg aatcatggtc cggaaaggat atggatctta tgaagagcta ctaaaagccc
     1921 gaaaaaaagg aaaatcccct ccaaaggaca agaaagggaa aaaggctgca aaggggaagc
     1981 ctgaaaaagg gaataaaaag taattatgta aatgaattaa tgaaaataaa gattgctaac
     2041 agagcaggaa ggcaccctgt ctaggggcca taaaacaacc acatgaaaat taaccatgaa
     2101 attaaggctg tttgtaataa taaaagagtc ttattttact gaaa
//
