LOCUS       NM_028938               2650 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus leucine-rich repeats and IQ motif containing 3
            (Lrriq3), mRNA.
ACCESSION   NM_028938
VERSION     NM_028938.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2650)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BY080708.1, AK132656.1 and BB019345.1.
            
            On Jul 14, 2006 this sequence version replaced NM_028938.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK132656.1, AK016634.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164133
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-36                BY080708.1         2-37
            37-2647             AK132656.1         2-2612
            2648-2650           BB019345.1         237-239
FEATURES             Location/Qualifiers
     source          1..2650
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 79.54 cM"
     gene            1..2650
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /note="leucine-rich repeats and IQ motif containing 3"
                     /db_xref="GeneID:74435"
                     /db_xref="MGI:MGI:1921685"
     exon            1..237
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     CDS             238..2139
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /note="leucine rich repeat containing 44; leucine-rich
                     repeat-containing protein 44"
                     /codon_start=1
                     /product="leucine-rich repeat and IQ domain-containing
                     protein 3"
                     /protein_id="NP_083214.2"
                     /db_xref="CCDS:CCDS38682.1"
                     /db_xref="GeneID:74435"
                     /db_xref="MGI:MGI:1921685"
                     /translation="MFHGTITKELTSHEEWSHYNENIIEDQKDFVFVKYSGLHLKSME
                     NLQTCISLRVCIFSNNFLTDIQPLQSCKKLIKLDLHGNQIKTLPDKNFWSGLKNLKLL
                     YLHDNGFSKLKNICVLSGCVSLIGLTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVIS
                     DEEIIQNWRLPERFKTFSPSLFFNLYPALIKGTTYEDEIKNIKHIISRINEILAHNSP
                     VLIIQRWIRGFIVRKHLSPYFKHKKHYHGKMIRVLETKLICIGRSDEDKYLEDFFFIK
                     PECNIKGKVAHWKQMRYSPADFKYSTEYGKHISCLSYELKTKYIDGKSKQPRHHIHKG
                     QKAMKAESEDEEVDTEFRISAMKIPLYSSRSLKYGAMLKEMKWDYFPQYLQPFPATRQ
                     KPPVKRETLWKLKKRREFLATQRAGMKLHMFDDVDKYYSEQKQHEEEARKFAAMVTAQ
                     VTQERASVNIREKLNKKIYMTRKLMEKDNETIQKGLQQIWRERLAYLEKVRERKFMFL
                     AEKKLNAADQSLVISLNNERSILLKGITQVERLKKHMSEKKAKHLDVIEKWEEQKYKQ
                     DLLMEMKKLRVEEIQKRHCEEKFVIDTLILQKGYERLEEAKAKVEYIKTFYTSKSHKR
                     RNEAMPDHI"
     exon            238..486
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            487..810
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            811..944
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            945..1107
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            1108..1237
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            1238..1964
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     exon            1965..2650
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2496..2501
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /note="hexamer: AGTAAA"
     polyA_site      2517
                     /gene="Lrriq3"
                     /gene_synonym="4930438B07Rik; 4930511J15Rik;
                     4933403H06Rik; Lrrc44"
                     /note="major polyA site"
ORIGIN      
        1 atgctctcca cgtcaccgcg gccctggaag cgccctgaga cttgaaaagc taggatggcg
       61 tgagcgtgcg caagcggcgt ttcctgggca acgatctgtg gggcagatgg gcgggcacct
      121 agcggggtcg ggttgtgcgg agctctgggt tcctgcctta ccgtgtctga caacccgcgg
      181 tgcgaccgag aagaccaacc cacccaccat tagtggatcc accacccaga tgctgagatg
      241 tttcatggaa caatcacaaa agagcttacc agccatgagg aatggagtca ctataatgaa
      301 aatataatag aagatcagaa agattttgta tttgtgaagt atagtggcct tcatctgaag
      361 tccatggaga acctgcagac ctgcatctct ctgagagtgt gcatcttctc taacaacttc
      421 cttactgaca ttcagccact gcagagctgc aaaaagctca tcaaacttga tctccatgga
      481 aaccagataa agactcttcc agataaaaat ttttggagtg gactcaagaa cctaaaactc
      541 ctctatcttc atgacaatgg attttccaaa ctgaagaaca tctgtgtatt gtctggttgt
      601 gtaagcctca tagggctgac catgtttgac tgcccagtga gcctgaagaa aggctacaga
      661 catgttcttg tcaacagtat ctggcctcta aaagctctgg accatcacgt gatatccgat
      721 gaagaaatca ttcagaactg gcgtcttcca gagaggttta agacgttcag ccccagtcta
      781 ttctttaacc tttacccagc attgataaag ggtaccacct atgaagatga aataaagaat
      841 atcaaacata taatttcaag aattaatgaa attctggctc ataattcacc agtgttgatt
      901 atccaaagat ggatacgtgg tttcatagtt aggaaacact taagccccta ttttaaacat
      961 aaaaagcatt accacggcaa aatgattagg gtgcttgaaa caaaattgat ctgcataggc
     1021 agaagtgatg aagacaaata cttggaggat ttcttcttta tcaagcctga atgcaacata
     1081 aaagggaagg ttgcacactg gaaacaaatg agatattctc ctgctgattt taaatattct
     1141 actgagtacg gaaaacacat ttcctgtctt tcatatgaat tgaaaacaaa atatattgat
     1201 ggaaaatcaa aacaaccaag acatcacatt cataaaggtc agaaggctat gaaagctgag
     1261 tctgaggacg aggaagtgga caccgagttt aggatatctg ccatgaagat ccctctatat
     1321 tcctccagat cactcaagta cggggcaatg ctgaaggaga tgaaatggga ctatttccca
     1381 caatacctcc agccatttcc tgccactcgt caaaagccac cagttaaaag agagactcta
     1441 tggaagctaa agaaaaggag agagtttcta gccacacaga gggctggcat gaagctccac
     1501 atgtttgatg atgttgataa atattactca gaacaaaaac agcacgagga agaagcaaga
     1561 aaatttgcag ccatggttac agcacaagtt acccaggaaa gagctagtgt caacattaga
     1621 gaaaagttaa ataagaaaat ttatatgaca aggaaactaa tggaaaagga taatgagaca
     1681 attcagaaag gcttacagca aatttggagg gagagactcg cctacctgga aaaagttaga
     1741 gagcggaaat ttatgtttct agctgaaaaa aaactaaatg ctgcagacca gtctttagtt
     1801 atttccctca acaatgagag gtccattctg ctcaaaggaa ttacccaagt tgaaagactg
     1861 aagaaacaca tgtctgaaaa aaaagcaaag cacttagatg ttattgaaaa atgggaagaa
     1921 caaaaatata agcaggattt gttgatggaa atgaagaaac tcagggtgga agaaatccag
     1981 aaaagacact gtgaagagaa atttgttatt gatacactca tcttacaaaa aggttatgaa
     2041 agacttgagg aggctaaagc aaaagttgaa tatattaaga cattttatac ctctaagtct
     2101 cacaaaaggc gtaatgaagc aatgccagat cacatctgat gatagttgtg aattgtgatc
     2161 actcttttta cttaaaggat ctcaaggtca tactgggaag acatgctctc cacaagacag
     2221 atctagggat agctaggttc aggatcagag agaagatatc cccagatgtt tctggtactg
     2281 actacaatgc aaatcctgtt gattttgcac ccatgaaggg tcactatgta tctatgcgcc
     2341 caggagagta tcaaagctgt ctgagttctt ctttaaaaac tcttccaaag actgcaggct
     2401 ttcatcgctc taacaacgac cagttgtaaa gctgctttca atattctctg gtaatttttt
     2461 atgttattgc caaattttat caaaatatta tatgcagtaa aaactttaat taccaaagtt
     2521 catatattga agtgtatttc ctgtttatct tattaaaata atttttaaat gttttaagtt
     2581 ttcaaaataa aagtttcacc aatgtatcaa ctacttatat taataaaaat taaaagacat
     2641 attatggaac
//
