LOCUS       NM_198861               2047 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus leucine rich repeat containing 75A (Lrrc75a),
            transcript variant 1, mRNA.
ACCESSION   NM_198861 XM_109813
VERSION     NM_198861.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC053455.1.
            
            On Dec 17, 2003 this sequence version replaced XM_109813.3.
            
            Transcript Variant: This variant 1 represents the longer transcript
            and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC053455.1, SRR1660811.379772.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164139
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 38.51 cM"
     gene            1..2047
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /note="leucine rich repeat containing 75A"
                     /db_xref="GeneID:192976"
                     /db_xref="MGI:MGI:2682293"
     exon            1..379
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /inference="alignment:Splign:2.1.0"
     CDS             134..1153
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /note="isoform 1 is encoded by transcript variant 1;
                     leucine-rich repeat-containing protein C17orf76 homolog;
                     leucine-rich repeat-containing protein FAM211A; family
                     with sequence similarity 211, member A; leucine-rich
                     repeat-containing protein 75A"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 75A
                     isoform 1"
                     /protein_id="NP_942561.1"
                     /db_xref="CCDS:CCDS24828.1"
                     /db_xref="GeneID:192976"
                     /db_xref="MGI:MGI:2682293"
                     /translation="MGTRQTKGSLAERASPGAAPGPRRERPDFWASLLLRAGDKAGRA
                     GSGLPPYHRRVGMVQELLRMVRQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFR
                     NLVDPITHDLIISLARYIHCPKPEGDAMGAMEKLCRQLTYHLSPHSQWRRHRGLKRKP
                     QACLKALLSGNPPDNMVDLSGIPLTSRDLERVTSYLQRCGEQVDSVELGFTGLTDDMV
                     LQLLPALSTLPRLTTLALNGNRLTRALLRDLTDTLKDPSKFPNVTWIDLGNNVDIFSL
                     PQPFLLSLRKRSPKQGHLPTILELGEGPGTGEEAREGTDQQDPIGSPVTPARGQESTE
                     CVIQT"
     exon            380..508
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /inference="alignment:Splign:2.1.0"
     exon            509..621
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /inference="alignment:Splign:2.1.0"
     exon            622..1984
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1963..1968
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /note="hexamer: AATACA"
     polyA_site      1984
                     /gene="Lrrc75a"
                     /gene_synonym="Fam211a"
                     /note="major polyA site"
ORIGIN      
        1 gccgcccccg cccccgcccc gcgcccgcgc ctcccgcgcg caacagttcc cccaaagttg
       61 cggccgggga ggcgcgaagc cggcggggga cgcggcctta gcccggcgcg cgcagcccca
      121 ggcgggcggc ggcatgggca ctcggcagac caagggcagc ctggcggaga gagccagccc
      181 cggcgcggcg cccggccccc gccgcgaacg acccgacttc tgggcgtcgc tgctgctgcg
      241 cgccggggac aaggcggggc gcgcgggcag tgggctaccc ccctatcacc ggcgcgtcgg
      301 catggtccag gagctgctgc ggatggtgcg ccagggccgg cgggaggagg cggggacgct
      361 gctgcagcac ctgcgccagg acctgggcat ggagtcaacc tccctggatg atgtgctgta
      421 ccgctatgcc agcttccgga acctggtgga cccgatcaca cacgacctca tcatcagcct
      481 ggcgcgctac atccactgcc ccaagccgga aggtgatgca atgggtgcca tggagaagct
      541 gtgccggcag ctgacctacc accttagccc tcattcacag tggaggaggc accgagggct
      601 gaagaggaag ccacaggcct gccttaaggc cctcctatct gggaatcctc cagacaacat
      661 ggtggatctg tcaggcattc cactgacttc aagggacctc gagcgagtga ccagctacct
      721 tcagcgctgt ggagaacagg tggacagcgt ggagctgggc ttcacaggcc tcacagatga
      781 catggttctg cagctactgc cagctctcag taccctgcct cgtcttacca cacttgccct
      841 caatggcaac cgactgaccc gggctctgct gagggacctc actgacaccc tgaaggaccc
      901 cagcaaattc cccaatgtca catggattga cctgggcaac aatgtggaca tcttctcact
      961 accccagccc tttctgctca gcctccggaa gcgctctcca aaacagggcc acctaccaac
     1021 catccttgag ctgggtgagg ggccaggtac tggggaagaa gccagggaag gtaccgatca
     1081 gcaggaccct atagggagtc ctgtgacacc tgccaggggc caggaaagta cagagtgtgt
     1141 gattcagaca tgacatcaca ataggggtcc taaccagtga gtcctttctg gacagccaag
     1201 acaggtcagg gtccctctga tcaggagatg gtctggccag ccctacccaa ctctcactag
     1261 gatgagatca gagtactaac cagtttgtcc tcaaacccga ctcccagtac ttgctcaagg
     1321 ggctcggatg tttccattca gctgtcctcc tagaccagtg catctggacc agaagttctt
     1381 tattgggccc acttacaatt taggcacagg cacctactct aagactctag gagcatctgc
     1441 ctacttccca aggccttctt aaaggcagta agtttcagaa taccaagtgt ggaaaatcca
     1501 gtttaagctg cagacctttt aggcaatctt atctatatag ggcctagctc ccttatccac
     1561 caaccagcac aactttttct accaggtcct cccataatct agtccctgta ttggcttttc
     1621 aaaaactcac ctctagaacc agtcctactt agcaaagagg gaaaactggg tgttcctaac
     1681 acccttaaac actcctagtc cccaactcaa gcccaagaga actgttctga attaagtggt
     1741 caaagtctga actcatgggg ttatggggaa gaacagcctt acaggccagg taagcaaaca
     1801 agatggcgtc tttgcatggc actgcagcca agaacaggga ttgagtgtgg gtgccttaaa
     1861 tgctttggaa tctttgccca agtccagctg tgcaaacagc tgagactgcc cagaagttta
     1921 cagtgctgaa gctggactgc ctaacacctg acactctact ctaatacatg ttttcaagga
     1981 ccaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     2041 aaaaaaa
//
