LOCUS       NM_001111142            1579 bp    mRNA    linear   ROD 08-AUG-2023
DEFINITION  Mus musculus leucine rich repeat containing 73 (Lrrc73), transcript
            variant 1, mRNA.
ACCESSION   NM_001111142 XM_001481057
VERSION     NM_001111142.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC116739.13.
            
            On Mar 9, 2023 this sequence version replaced NM_001111142.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC147714.1, SRR13948564.3092477.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-647               AC116739.13        39085-39731         c
            648-808             AC116739.13        38362-38522         c
            809-931             AC116739.13        37920-38042         c
            932-1032            AC116739.13        37418-37518         c
            1033-1255           AC116739.13        36831-37053         c
            1256-1579           AC116739.13        36385-36708         c
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 22.9 cM"
     gene            1..1579
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /note="leucine rich repeat containing 73"
                     /db_xref="GeneID:224813"
                     /db_xref="MGI:MGI:2684934"
     exon            1..647
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     CDS             376..1326
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 73
                     isoform 1"
                     /protein_id="NP_001104612.1"
                     /db_xref="CCDS:CCDS50123.1"
                     /db_xref="GeneID:224813"
                     /db_xref="MGI:MGI:2684934"
                     /translation="MLPSSIQISGEPLSGAEVRDICRGLRDNAVRLLSLRGCRLCDRD
                     FGRICRALAGATSLAQLNLNLGVVSSPSRIKQLAEALRTNRSIQSLFLHGSPLTDAGL
                     ALLNPALALHPALVALDLGDCMLGDEAINLICGLLPPDGAKSGLKELTLSANPGITPK
                     GWSRLAIAVAHSSQVRVLNLDYNPLGDHVAGMLAVAVASSRTLEVLDLEGTGLTNQSA
                     QTLLDMVENYPTALRSLVLAENSISPELQQQICDLLSEGEEEEEMAGGAADTQEWERG
                     REPAAHQRSGSSWMCPSDPSSQMVLMTSGLGDSLLAETEM"
     exon            648..808
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            809..931
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            932..1032
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1255
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
     exon            1256..1579
                     /gene="Lrrc73"
                     /gene_synonym="Gm88"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcccgcccc ggctgtcccc gagagccgtg ctgccgggcc ccgggcccgc agagcgggcg
       61 cggcctccta agccgcgagg gagaggacca gcgcggggtg gctgcagctc tgtccccggc
      121 cgcccccgcc cccgcctccc gccgcttctc ttccgcgcct ccgcacccag gcccgcgcct
      181 gctttcgatc ccgccgcggc cgccgttgcc tccgcttccg actcagcctc tgctgcctcc
      241 gcctccgcct ctgcctccgc tccggccgcg accccaaccg ggaccgcgac ctgaatcccc
      301 gccccgcccc cgggccaact tctgcccagg ccgggacacc ggcggcagcc cccccgaggc
      361 ccagccgtgg ggaccatgct gcctagctcc atccagattt cgggggagcc gctgtcaggc
      421 gccgaggtgc gggacatctg ccgcggcctg cgcgacaacg cggtgcgcct gctctcgctg
      481 cgcggctgtc gcctgtgcga ccgcgacttc ggccgcatct gccgggccct agctggagcc
      541 acgtccctgg cgcagctcaa ccttaacctg ggcgtcgtgt ctagccccag ccgcatcaag
      601 cagctggcag aagcgctacg gaccaaccgc tccatccagt ccctcttcct acatgggagc
      661 ccactgacag atgcgggact ggccttgctg aacccagccc tggctctcca ccctgccctt
      721 gtggctcttg acctggggga ctgcatgttg ggtgatgaag ccatcaacct catctgtggc
      781 ctactccctc cagacggggc caagtctggt ctgaaggagc taacactgag cgccaaccct
      841 ggcatcaccc ccaagggttg gagccgcctc gccattgctg tggcccacag ctcccaagtc
      901 cgcgtcctca acctggacta caaccccctg ggcgaccatg tggcagggat gctggctgta
      961 gctgtggcct caagccgtac cctagaagtc ctagacttgg agggcacagg gctcaccaac
     1021 cagtcagctc agaccctgct ggacatggta gaaaattacc caacagcttt gcggagcctg
     1081 gtgttggccg agaacagcat tagtccagag ctgcaacaac agatttgtga cctcctatct
     1141 gagggggagg aagaggaaga gatggcagga ggggctgccg acacccagga atgggagaga
     1201 gggcgggagc ctgctgccca ccagcggagt ggcagctcct ggatgtgccc cagtgatccc
     1261 agttctcaga tggtgctaat gacatcagga ctaggggaca gtctgttggc tgagactgag
     1321 atgtgactct ccgcttggac ttctgcacag cattgcattt gtctgtgtcc tcactacctt
     1381 cctccacaga gcagggaaag gccctggctg gggctctggc agctcctggt agtggcacga
     1441 ggctctggaa gctgtcactg ggcaacagcc ttgaggggtg gcggggggac ttgaacccag
     1501 ggtactgact ttgaacttgt tggcagctct ggctgcaacc cgctggctcg gaacagattt
     1561 tataaactcc acaacctga
//
