LOCUS       NM_001361098            1160 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus leucine rich repeat containing 72 (Lrrc72), transcript
            variant 3, mRNA.
ACCESSION   NM_001361098
VERSION     NM_001361098.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   West DB, Engelhard EK, Adkisson M, Nava AJ, Kirov JV, Cipollone A,
            Willis B, Rapp J, de Jong PJ and Lloyd KC.
  TITLE     Transcriptome Analysis of Targeted Mouse Mutations Reveals the
            Topography of Local Changes in Gene Expression
  JOURNAL   PLoS Genet 12 (2), e1005691 (2016)
   PUBMED   26839965
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124776.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR5189685.48397.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               AC124776.3         130997-131175       c
            180-253             AC124776.3         125376-125449       c
            254-323             AC124776.3         121050-121119       c
            324-405             AC124776.3         100527-100608       c
            406-516             AC124776.3         99268-99378         c
            517-606             AC124776.3         92104-92193         c
            607-759             AC124776.3         90342-90494         c
            760-787             AC124776.3         87468-87495         c
            788-1160            AC124776.3         86106-86478         c
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 16.63 cM"
     gene            1..1160
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /note="leucine rich repeat containing 72"
                     /db_xref="GeneID:71156"
                     /db_xref="MGI:MGI:1920830"
     exon            1..179
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             87..953
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /note="isoform 3 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 72
                     isoform 3"
                     /protein_id="NP_001348027.1"
                     /db_xref="CCDS:CCDS88328.1"
                     /db_xref="GeneID:71156"
                     /db_xref="MGI:MGI:1920830"
                     /translation="MSRNRNSSSFVFPCTKVRKVSVENALPSSLKAVEDQLKICGHKR
                     DIDVLELFLSKKELTEVIDLSRFKKLRYLWLHHNKLHGISFLTRNYCLTELYLNNNAI
                     FEIEGLHNLPSLNILLLHHNELTNIDATMKELKGMQNLRSLSLYQNPLSQYNLYRLYI
                     IFHLPGLELLDRKQITEKERRYMITIFDHKKAHVIQSVAFGKRVDASWNPKLPIKQKR
                     VKKPPSDFAFGDNVDKTLFDDPEDAVFVRSTKRSLMTFTSMNWNTVLTRSEKYDQKKK
                     SSAAEMLMISLR"
     exon            180..253
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            254..323
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            324..405
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            406..516
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            517..606
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            607..759
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            760..787
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            788..1160
                     /gene="Lrrc72"
                     /gene_synonym="1700108M19Rik; 4933421E18Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtggacgaa aaggtggaaa gggaaggata cagccttagc caagcccagt gagctattgg
       61 tgcccctcac tgccttaatt ttcctgatgt ccagaaaccg gaactcctcc tcgttcgtct
      121 ttccctgtac taaagtccgg aaggtgtcgg tggaaaatgc tctgccaagc agcctgaagg
      181 cagttgaaga tcagctaaag atatgtggcc acaagaggga tattgacgtc ttggagctat
      241 tcctttctaa aaaggaactg acagaggtta ttgatctttc tagatttaaa aaattaagat
      301 atttgtggct ccatcacaat aagctacacg ggatatcatt tttaactcgg aactattgtc
      361 tgaccgagct gtatctgaac aacaatgcaa tatttgagat agaaggcctg cataatttgc
      421 cttcactgaa tattctcctg ttgcaccaca atgagctcac aaacatcgat gctactatga
      481 aggagctgaa ggggatgcag aatctgcgga gcctaagtct gtaccaaaac cctttatccc
      541 aatataacct ctaccgattg tatataatct tccaccttcc cggactggag ttgcttgatc
      601 ggaaacaaat tacagagaaa gagagaagat acatgattac catttttgac cataaaaaag
      661 ctcatgtgat tcaatcagta gcatttggaa aacgagtgga tgcctcctgg aaccccaagt
      721 taccaataaa gcaaaagcgg gtcaaaaaac ctccctcaga ttttgcattt ggggataatg
      781 ttgacaagac actgtttgat gacccagaag atgctgtgtt tgtaagatcc acgaagagat
      841 ccctgatgac gttcaccagc atgaactgga acaccgttct aacacgaagt gaaaagtatg
      901 accagaagaa aaagagctcg gccgctgaga tgctcatgat ttccctgcgg taacgagcac
      961 ttccggaaac tcccggtgct gttcgctcac tcgttagaac actccctcga tttagctccg
     1021 tgtacatttg ttgctacccg aatttttaaa atagaagagt cagtagtgaa aaatgtttca
     1081 taatgtaaaa attgtatatg agttacccac gtataaaaaa taaagccatt tttttcctcc
     1141 cagccactca cttctcaaca
//
