LOCUS       NM_177093               8592 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus leucine rich repeat containing 58 (Lrrc58), mRNA.
ACCESSION   NM_177093 XM_283351
VERSION     NM_177093.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 8592)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 8592)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK049274.1 and AC161268.5.
            
            On Jul 14, 2006 this sequence version replaced NM_177093.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR1660819.86375.1, AK147818.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-469               AK049274.1         2-470
            470-581             AC161268.5         104695-104806
            582-1713            AK049274.1         583-1714
            1714-8592           AC161268.5         117805-124683
FEATURES             Location/Qualifiers
     source          1..8592
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 26.49 cM"
     gene            1..8592
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /note="leucine rich repeat containing 58"
                     /db_xref="GeneID:320184"
                     /db_xref="MGI:MGI:2443542"
     exon            1..581
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            582..710
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            711..988
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            989..8592
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      8504..8509
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /note="hexamer: AATACA"
     polyA_site      8525
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /note="major polyA site"
     regulatory      8555..8560
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
                     /note="hexamer: GATAAA"
     polyA_site      8568
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
     polyA_site      8572
                     /gene="Lrrc58"
                     /gene_synonym="1810012N18Rik; C330018J07Rik"
ORIGIN      
        1 gggccgtacc gggccgcgcc gcgccacttc cgacgcggcg ctcgctttag gttccggggc
       61 gcgccgcctc ggctcgcggg cccgggatcc ggcgggatgg aggaggccgc gctcggggag
      121 gccgaactca actggtcccg cctcagcgtg tcggccgagg cgttggagtc ggagctggag
      181 gcgcgcgccg aggagcggcg cggcgcgcgc gaggctctcc tgcggctgct gctgccctac
      241 aaccgcctga cgtcgctgcc gcgggcgttg ggcggcggct tcccgcacct ccagctcctg
      301 gacgtgagcg gcaactcgct cacggcgctg gggcccgagc tgctgacgct gagcggcctg
      361 cgcacgctgc tggccaggaa caaccggctc ggcggcccgg gctcgctgcc caagggcctg
      421 gcccagtcgc cgctctgccg cagcctccaa gtgctcaacc tcagcggcaa ctgcttccag
      481 gagctgcccg cctcgctgct ggagctgcgc gcccttcaga ccctcagcct gggcggcaac
      541 cagctgcaga gcatccccgc cgagatcgag aacttgcgga gtttagaatg tttatacctt
      601 ggaggaaact tcattaaaga aatcccacca gaattagcaa atctgccttc tctgaattac
      661 ttggtgttgt gtgacaacaa gatccaaagt gtgcctcccc agctctcaca gttgcattcg
      721 cttcgatccc tcagtctgca caataacttg ctgacttacc tgcctcgaga gatccttaat
      781 cttattcacc tggaagagct gagtttacga ggaaacccgt tggttgttcg ttttgttaga
      841 gatttaacgt atgaccctcc gactcttctg gaattagctg caaggaccat taagatccga
      901 agtatttctt acactcccta tgaccttcct gggaatcttc ttagatactt gggttcagcc
      961 agcaactgtc caaacccaaa gtgtggtgga gtctattttg actgttgtgt cagacaaatt
     1021 aagtttgtgg acttctgtgg gaagtaccgt ctccccctca tgcactatct gtgctctcca
     1081 gagtgctcct ccccctgcag ctctgcctcc catagctcca cctcccagag tgaatctgac
     1141 tcagaagatg aagccagtgt tgctgcacac agaatgcaga aagtccttct tggttgagca
     1201 gcaatgggta ttgaaaaata ttaaaacact gaacagaaat gactaaaagg aaatgggtct
     1261 tgaagttgat tggagacctg agcgttttca tcttgagtgt ccatgtaaga cctgccatga
     1321 tgtgaaagaa aggttttgca ttctgtctac acattcggca ggaatgagtc cagttccctg
     1381 tttagattct ttgagtgtaa tttattgtga atggcagttc aaaattcagt tgatcggtct
     1441 taattttcat gtaagtcttt gaagaaacac taacaggatg gttcattctg aagaacaggc
     1501 ttgcctgtaa tcagccggaa gtgggatcgc ctgggacagc tgagttgcat aaagacatca
     1561 tcacagttct ggtacaaggg ttgtcctggt ttatgctgaa cactagacat aaaatgagcc
     1621 ttctccttgt gttcttctcc tggactattg aaagcctttc tgaccaacta acaggacagt
     1681 caggactata acttttaaat ggagtattaa accagctctt gttttgtgtg tttgttacta
     1741 actttatata atctagcagt gatatgttat agtgccttaa tcctagtaag attatggaag
     1801 cttattatag aaattatttc agagcaacct acaacctgac actgtgtaaa acacttggaa
     1861 atatacttta accaattagt tgaacaattg tttagataac acctgggttc tgagggcctg
     1921 gaactctgta gaatgggctg ctctggaact cagagatcca ccaggtggga gatcttccag
     1981 gtggcaattc caggggtcct ccacctccct agttgctgag attacaggtg tacactacca
     2041 tctgcttcct gcttccatgt ccatcttaac ttcatttttg tttattacaa tgatctcttc
     2101 taagtaaaca gcttttacac ttaatgagaa tgagaggcta aagtcttcat ctgtctattc
     2161 accaaaagac agaataataa tttgggacca aaaaaatcta gatgacggag tcagcgtcta
     2221 cccgagagca cagccttctt gcagctcctc cgttgccggt ccacaccccc agttcgccat
     2281 ggatgacgat gccgctgcgc tcgttgtcga caacggctcc ggcttcgcag gcgacaatgc
     2341 tcccctcccc gggccgtctt cccctccatc gtgggctgcc ctaggcacca gggtgtgatg
     2401 gtgggtatgg gtcagaagga ctcctgcatg ggcgacgagg cccagagcaa gagaggcatc
     2461 ctgaccctga agtaccccat tgaccatggc attgtcacca actggaacga catggagaag
     2521 atctggcacc acaccttcta cagtgagctg cgtgtggccc tgtgctgctc accaaggccc
     2581 ccctaaggcc aacagtgaaa agatgaccca gatcatgttt gagaccaata ccccagccat
     2641 gtctgtagcc atccaggctg tgctgtccct gtatgcctct ggtcgtacca ctggcattgt
     2701 gatggactcc ggagatgggg tcacccacac tgtgcccatc tacgagggct atgctctctc
     2761 cctcacgcca tcctgcgtct ggacctggct ggccgggacc tgacagacta cctcatgaag
     2821 atcctgactg agcatggcta cagcttcacc accacagctg agagggaaat cgtgcgtgac
     2881 atcaaagaga agctgtgcta tgttgcccta gacttcgagc aggagatggc cacggccgca
     2941 tcctcttctt ccctggagaa gagctatgag ctgcctgacg gccaggtcat cactattggc
     3001 aatgagcggt tccgataccc tgaggctctt ttccagcctt ccttcttggg tatggaatcc
     3061 tgtggcatcc acgaaactac attcaattcc atcatgaagt gtgacgttga caccaagatc
     3121 tctatgccaa cacagtgctg tctggtgata ccaccatgta cccaggcatt gctgacagga
     3181 tgcagaagga gattactgct ctggctccta gcaccatgaa gatcaagatc attgctcctc
     3241 ctgagcgcaa gtactctgtg tggatcgatg gctccatcct ggcctcactg tccaccttcc
     3301 agcagatcgg ctcagcaagc aggagtagga tgagtctggc ccctccatcg tgcaccgcaa
     3361 atgcttctag gcggactgtt ttacaccctt tctttgacaa aacctaactt gtgcagaaaa
     3421 aaaaagagag acaacattgg catggctttg tttttgtttt ttaatttttt ttaaaaggtt
     3481 ttttgttttg ttttggcgct tttgactcag gatttaaaaa ctggaacggt gaaggcgaag
     3541 gcagtcggtt gaagcaaaca tcccccaaag ttctacaatg tggctgagga ctttgattgt
     3601 acattgtttt tttgattttg tcttttttta atagtcatcc caagtatcca tgaaataagt
     3661 ggttacagga agtccctcac cctcccaaaa gccaccccca ctcctaagaa gaggatggcc
     3721 gagtccacgc cctgagtcca ccccggggaa ggtgacagca ttgcttctgt gtaaattatg
     3781 tactgcaaaa attttttaaa tcttctgcct taatacttca tttttgtttt taatttctga
     3841 atggtcagct agtgtggccc cccttttttg tccccccaac ttgatgtatg aaggctttgg
     3901 tctctctggg agtgagttga ggtgttgagg cagccagggc tggcctgtac actgacttga
     3961 gaccatttta ataaaagtgc acaccttacc aaaaaaaaaa atctagatga caagtagtct
     4021 aagaatacct gctttacaat attggaataa atgagtgaaa gttggacata gttgtgcaca
     4081 ccttcagacc agcacttggg aggtggaggc agaagaacag gacttcaaag ttactaggct
     4141 tcatagtaaa tttgaggcca acctgggcta caaacatgaa aacttgtctc gatatggatg
     4201 gggggtggat tttaaccatc aagtgtgtct cctttgttcc tctttgttac taaaccatga
     4261 cttccaacta cataaacatg agcatgaagc agagcccgtt atgttcatcc acagtagagt
     4321 agttcacaga gctagcataa tcattgaaca ctgaaaaaag tattaagaaa acattgtatc
     4381 cttaaggtgt gaagaaaaat agtaacacaa attattgtca ttggaaatta atacatttta
     4441 ctaactagtt gattgggcaa ttaaaaaata ctaaaagtat aagctaacat taaaaaatat
     4501 gtaactctca ctgctgatca ttaaccaacc tgtaatgaca ggaagcctag ttggtaagtg
     4561 ccaaaagtag tttcacattg tattagggca tcaggtggtc tcttcaagtg tgttttatta
     4621 gaagccaact gtatgctcag agtagttgtg tgtaggtttc ttgtatatat tattttagta
     4681 gaatatatta gtaggttcta gggtaattca gggtttgtat gtgtgtgtat cacgccatga
     4741 aacacaagag tttcgtggct gcagttgtga aacgctgcta tagtgagtcc ccttaccttt
     4801 ccctcggaat agtgtagtaa gattattttt ttttttcttt ttgatttagg aattttcttc
     4861 ctgtgtttat agaagtgatg tttctactgc taatgtaatt gtatgataga acatataaag
     4921 tctttgttta tttcgccaag taagcatctg taagctgcag attgcaaggt tgggaaaagc
     4981 aaagatgact tgtaaatgct ttgtaattag atcatttagt taagcaacac tgaacatttt
     5041 cttggaaaat gctcaaattg atgggaccac attcttctgg attaaatact tgtactttct
     5101 tgactgatag tcatcttgac ttaagtagtt tgagtagcct tttaggaatt acttgtaaat
     5161 agccttgtaa atagagcatt taaccatatg tacccttcct agcctcccag aaagcaagtg
     5221 tatcgtttct tcttttatag ttgtaaataa tccagccaga ggtagtttct agcctgtgcc
     5281 atatagatgt ttcctacggt gttctctcaa caaagtgttt attgtggttc tttatgtgta
     5341 tagctaaagt ctatgtgcag tgtgctgggt cagcgtggtg gggatgctgg ggataggtac
     5401 agagcctggt gcgtgttagg caagctacag ttcatgcctg gcacaggtcg cttgtaatga
     5461 aatctgcagt tagcttttat attttttaga actcatctta gaccctatct tttacggaag
     5521 ttgctagtga tttcttaatt tttttctttc tttttcatat ttttttaaac taatgattag
     5581 atgtcagctt agtgtaatag gaattggcca tctggaagct gatcatcttc tgaagtcagc
     5641 agatgatcat ttaagactgt taaatgctat ttggcctcat tagttatgag ttgcatgtgt
     5701 atctaatgaa tgcttagagt ttcagaatcc gcaattttta ttatacagtt attttctttt
     5761 cctttttttt tctttctttt tttttttttt tttttggttt ttcgaaacag ggtttctctg
     5821 tgtagtcctg gctgtcctgg aactcactct gtagaccagg ctggcctcga actcagagat
     5881 ccacctgcct ctgcctccca agtgctggga ttaaaggcgt gcgccaccac cgcccagcca
     5941 ttattttatt ctctgagaca gggcctggct gtgtagccca ggctagcctt gaacttctta
     6001 tggtaactct tgtctcagct tcccagctgc tgggaatacc acataccctg ctttaaatgt
     6061 tttactttaa aatgtgccaa aggtgcctct tggtctaaaa atcttgatat taaatgttat
     6121 tgccaatatt aaaaataagc gttcattata aattgtactt gaaatatatg acattttggg
     6181 gtgatgtaaa taaaagtaga gctcaaccct tagtagtgca gcacgtccct gagaccagtt
     6241 ctaagagacg ctgaaatatt gggtttaaat gaagaatcaa gaagaggctg ttggctggaa
     6301 tgttagatga aacaaatctt ttaaaatcaa catggggtag ggaaagagaa atcataggta
     6361 cccaggcaaa tccctgagcc agtaaggccc tgtagagtaa taatgaattg ttaccttaaa
     6421 atcttatcac taactttatt agtattatta attattacgt tggttcctac tgctgggaag
     6481 ctgttcacat cgctccttat acaggagcca gcaagctgta ggctttcttc agccttgctc
     6541 ttcccagctc tggagagtcc ctccctgacc tggtggttat aatacagcag gcggccttgg
     6601 ttaatgttta ccttttcatt gtgtttttga aaactacaaa tcaagtattt agtagtagct
     6661 atttacaaat gtgtttgcat tcgagtgctt gtagatacaa ctttacatgt aaacatgtgt
     6721 aacattattt agctacattg agtttgtaag tgcctttacc taaatgattt gcctttcatc
     6781 aaaaagtaga cattctatta taagtattgc tctttgttta gtgcaaaata cggagttctt
     6841 aagttagact gggcatgtaa cacagtgaag gtgctgtgta ggcttttagg cggcatgacc
     6901 tttagcgcat agttctatgc cagtgcttaa atagaagtgt ttatttatcc ttcactagtt
     6961 atacattagg catataatgt tatgtgacat taactcagta atgtgtggtt ttatatttct
     7021 gacatagtgt gatcttttta atagtaccgt aggtatcgtg tcctttgtga tcttccattt
     7081 agcccttagt gtgggaaaga aagtatatgg taaattgttg gcaatagcta tatgatgcgt
     7141 atttgacttg agggagaaag actgctcctg agaggttcct ctgcccacaa cagatgtagg
     7201 aaatcttcat catgctgtgc caggaagatc agagccctcc agaatcaagg atggagccct
     7261 accactacca ccccaccccc cagtcaaacg gtgtatcttt tacctagaat tttatttaaa
     7321 atgtatttgc taccacaaag gataagagaa gttccatcct cttatgaaaa cattgttact
     7381 gaggtctagc gagtttcagc aacagttttc ctataggttg aaaagggggt cgtttaatag
     7441 gaataaaaac ctccattctt tttatatttt ttgtgatctg tatttacaaa ggattgaagt
     7501 aagcattcca ctaactcaca gagttgaaca tttagaaggc agttttatgg ttgctgtcag
     7561 gcttttactt tagtcagtct caatgagtga cataatatgc agtctcatgt atgtattgaa
     7621 tttagtggct taatgaaggc tatttacatg cagaaagcta tctgcattca tcataatata
     7681 cttgattctt tcagccataa ataaattgaa tataactgta ttatttaaaa ctctagctgg
     7741 aggagtctta gatgagttgg cattgctgtt tgctggcatt ggagcagtag ctaagttggt
     7801 tggttttgtg tacgaggatg gttaagagag tcactgagca cagtttacat ggtcagcact
     7861 gctgttgtga gaaacagtgt taactcactt gtcactttct gtcatgtcta gacttgtgtt
     7921 gagatgtgtc acattctcag cctactttgt gtgataagca aaaacataat gggaaaagct
     7981 ttttaaataa caggtcttag ctttttaaaa ttgggggttt caaaaacaac aagagatgct
     8041 gaaaagatgt taccttttac tttggtcaga tcattacgta tgctctgaca tcttaatttt
     8101 ctatacttaa agtctgtatt agaaatatct gtataagtat atacataatt aaaatgtagc
     8161 tcagaaatat gattcaacag tggagttttt tttttctgga aaaaatatag tcctattgta
     8221 tcagatttat tttactttat tatggctaat attctaaaaa gaatgtttaa gctattttaa
     8281 attcttgtgc ctcttccccc aaaggatatt taaaaatatg atcttatatt aactttatat
     8341 tctttcttca taaattttgc cttaaacatt gtgccttgtt ttattagaat ctaattctgg
     8401 cttttgtaac aacattttat tttaaacaga catttacttt taaaaaatcc ttataatgct
     8461 tgtatttgct atatcactgc ttatctgttt attgaattta ttgaatacac aactccaaac
     8521 actaagcgtg ttttagcatt tattgtatgt actagataaa agagaaaata aagatacagt
     8581 gtgttcttct ga
//
