LOCUS       NM_029985               1756 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus leucine rich repeat containing 42 (Lrrc42), mRNA.
ACCESSION   NM_029985
VERSION     NM_029985.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  AUTHORS   Watahiki,A., Waki,K., Hayatsu,N., Shiraki,T., Kondo,S.,
            Nakamura,M., Sasaki,D., Arakawa,T., Kawai,J., Harbers,M.,
            Hayashizaki,Y. and Carninci,P.
  TITLE     Libraries enriched for alternatively spliced exons reveal splicing
            patterns in melanocytes and melanomas
  JOURNAL   Nat Methods 1 (3), 233-239 (2004)
   PUBMED   15782199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ174174.1, BC027203.1 and BX632859.1.
            
            On Jan 13, 2006 this sequence version replaced NM_029985.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC031894.1, BC027203.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN01164141
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                CJ174174.1         2-69
            69-1737             BC027203.1         1-1669
            1738-1756           BX632859.1         2-20                c
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="FVB/N"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 50.18 cM"
     gene            1..1756
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /note="leucine rich repeat containing 42"
                     /db_xref="GeneID:77809"
                     /db_xref="MGI:MGI:1925059"
     exon            1..259
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            260..746
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             274..1539
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 42"
                     /protein_id="NP_084261.1"
                     /db_xref="CCDS:CCDS18434.1"
                     /db_xref="GeneID:77809"
                     /db_xref="MGI:MGI:1925059"
                     /translation="MAYYLNSEAHLDPGPIYVRENGQLHMVNLALDGVKNSLQKPRPF
                     RLFPKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVD
                     HIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYL
                     VVAEKLEEIKSFRELTRLDLSCCWLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGI
                     RKMTAPVRVMKRGLENLALLDLSCNPEITDAGIGYLFSFRKLNCLDISGTGLKDIKAV
                     KDKLRANIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVSVEAVRQRKDVEPRKAA
                     QYFYQNRARTEVTRKCPLAETHMNSSGKLQFYREEAPDCHEPLLSQESKKSKKRAFKE
                     SEQEQSSPQSAKQKCVCLAVEDWDLLNSY"
     exon            747..878
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            879..997
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            998..1086
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1087..1200
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1285
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1286..1756
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1732..1737
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1756
                     /gene="Lrrc42"
                     /gene_synonym="A930011F22Rik"
                     /note="major polyA site"
ORIGIN      
        1 agaccacgcc cctcatgccg gccccgcgca cgcgcgccta cccagccgag ttcttttccc
       61 cccccacccc tccctgctgg tacctcagtc ccgcggcgcc aggtcgcccc cagcccctcc
      121 ctcttgccac cctctgtgtg tgtcccaccc tcacgggctt tgtggcctag gttgccgagc
      181 cgcttcccgg tcagccgctc agtggaggaa ggagccgcca gtgaggtgca gccgctcgct
      241 gccccgggca ggggcacagt tgcaaccaag gcaatggctt actacctcaa ctcagaagcc
      301 cacctggatc cagggcccat ctatgttcga gaaaatgggc agctacacat ggtcaacctg
      361 gctctggatg gtgttaaaaa cagcctgcag aagccacgac cattcagact ctttcccaaa
      421 ggcttttccg tggagctgtg catgaacagg gaagacgaca ctgcacagaa agagaagacc
      481 gatcacttta tcttcacgta cacccgagag gggaatctgc gatactctgc taagtccctc
      541 ttcagtctgg tgctgggctt catctccgac aatgttgatc acattgattc cctcatcggc
      601 tttcctgagc agatcgctga gaagctgttc tctgctgctg aagccagaca gaaattcaca
      661 gagccagggg cagggctcag ggcgttacag aagttcactg aggcctacgg gagtctggtg
      721 ctgtgctcgc tgtgcttgcg aaacaggtat ttggtggttg cagaaaagct tgaagagatc
      781 aagtctttcc gggagctgac ccgtctagac ctctcctgtt gctggcttgg agatgagcat
      841 gagcttctag aacacctcac caatgaagct ctgtccagtg tcactcagct ccacttgaag
      901 gataattgct tatctgatgc aggcattcgg aaaatgacag caccagtgcg ggtgatgaaa
      961 agaggccttg agaatctagc gctgttagac ctgtcttgta accctgagat aacagacgct
     1021 ggaattggat acctgttttc atttagaaaa ttaaattgct tggatatctc tggaacagga
     1081 ctaaaggaca tcaaagccgt taaggacaag ctccgggcaa acataggcct tgttcactcc
     1141 aaagtgcctt tgaaggaatt tgatcatagt aactgcaaaa cagagggctg ggctgaccag
     1201 attgttctac agtgggagcg agtgagcgtg gaagccgtgc ggcagcggaa agatgtggag
     1261 cctcgaaagg cagctcaata cttctaccag aatcgagctc gcacagaagt tacaaggaaa
     1321 tgtcccctcg cagagaccca catgaactct tctggaaaac tccagttcta tagggaggag
     1381 gctccggact gccatgagcc actgttgagc caagaatcaa agaagagcaa gaagagagct
     1441 ttcaaggagt cagagcagga gcagagctcg ccccagtcgg ccaagcagaa gtgtgtgtgt
     1501 ctggctgtgg aagattggga tttgctcaat tcctactgac tgacacatac agtcgacctc
     1561 ccccacctca gtacgaggag gggagactgc tggtgatttt cttttggttt ggatttacct
     1621 atggcattag catagcaagc agatatttct acttttgtgg tgcgggaggg aaggctatgg
     1681 acgtatgtaa taatttctaa tgtatatttt caatacatag taattttttc aaataaactc
     1741 ttttgctctc gttgaa
//
