LOCUS       NM_024194               2741 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus leucine rich repeat containing 40 (Lrrc40), transcript
            variant 1, mRNA.
ACCESSION   NM_024194
VERSION     NM_024194.6
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2741)
  AUTHORS   Combes AN, Lesieur E, Harley VR, Sinclair AH, Little MH, Wilhelm D
            and Koopman P.
  TITLE     Three-dimensional visualization of testis cord morphogenesis, a
            novel tubulogenic mechanism in development
  JOURNAL   Dev Dyn 238 (5), 1033-1041 (2009)
   PUBMED   19334288
REFERENCE   2  (bases 1 to 2741)
  AUTHORS   Garcia-Frigola C, Burgaya F, Calbet M, Lopez-Domenech G, de Lecea L
            and Soriano E.
  TITLE     A collection of cDNAs enriched in upper cortical layers of the
            embryonic mouse brain
  JOURNAL   Brain Res Mol Brain Res 122 (2), 133-150 (2004)
   PUBMED   15010206
REFERENCE   3  (bases 1 to 2741)
  AUTHORS   Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng
            EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC,
            Babbitt PC and Ferrin TE.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ072347.1, AK034978.1 and AW492724.1.
            
            [WARNING] On Dec 27, 2023 this sequence was replaced by
            NM_024194.7.
            
            On Jan 23, 2014 this sequence version replaced NM_024194.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK034978.1, AK148748.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-21                CJ072347.1         4-24
            22-2700             AK034978.1         2-2680
            2701-2741           AW492724.1         1-41                c
FEATURES             Location/Qualifiers
     source          1..2741
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 81.65 cM"
     gene            1..2741
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /note="leucine rich repeat containing 40"
                     /db_xref="GeneID:67144"
                     /db_xref="MGI:MGI:1914394"
     exon            1..195
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..1853
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /note="isoform a is encoded by transcript variant 1;
                     leucine-rich repeat-containing protein 40"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 40
                     isoform a"
                     /protein_id="NP_077156.2"
                     /db_xref="CCDS:CCDS17935.1"
                     /db_xref="GeneID:67144"
                     /db_xref="MGI:MGI:1914394"
                     /translation="MSRQLRAPRFDPRAGFHAEGKDRGPSVPQGLLKAARSSGQLNLA
                     GRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIISSNKLQSLSDDLR
                     LLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSLKNLRTLHLQH
                     NELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLKNLPAEISR
                     MKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPSCRQLKELHLAENQ
                     IEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNL
                     HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTLPSEAR
                     VNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVELKEM
                     VLDINLSFNKLSFISHELCLLQKLTFLDLRNNFLSSLPEEMSSLTKLQTINLSFNRFK
                     VFPEVLYRISTLEAVLISNNQVGSVDPQKMKLMENLNTLDLQNNDLLQIPPELGNCVQ
                     LRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIPA"
     exon            196..377
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            378..451
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            452..581
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            582..705
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            706..848
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            849..1021
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1109
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1110..1155
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1156..1264
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1372
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1373..1483
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..1561
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1562..1747
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1748..2725
                     /gene="Lrrc40"
                     /gene_synonym="2610040E16Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacgtcacag ccgtggtcgg ggcttccggt gtgagctttt gaatatgtcg cgccagctga
       61 gagcccctag gtttgaccct cgtgcgggat tccacgcgga gggcaaggac agaggcccct
      121 ctgttcccca gggcctgctg aaggcagcga gaagcagcgg ccaactcaac ttggcgggaa
      181 ggaacctcgg ggaagtccct cagtgtgttt ggagaataaa tgtggacatt cctgaagagg
      241 ctaatcagaa tctttcattc agttctactg aacgatggtg ggatcagaca gatctgacca
      301 aactcatcat ctccagcaat aaacttcagt ctctctctga tgacctccga ctcttgcctg
      361 cccttactgt tcttgatata catgataatc agctgacatc tcttccttca gctataagag
      421 agctagacaa tcttcagaaa cttaatgtca gccataacaa actgaaaata ctgcctgaag
      481 aaattacaag cttaaaaaac ctgaggacgc tgcacctcca gcacaatgag ctgacttgca
      541 tccccgaggg atttgagcat ctttcctgct tagaagattt agatctttca agcaatcgtc
      601 ttgcaactgt gcctgctgat tttgctttgc tgtccagtct gttgcgactc aatctttcca
      661 gtaaccagct gaagaatttg ccagcagaaa taagcagaat gaaaagatta aagcacttgg
      721 attgtgatgc caatctcctg gagactgtgc ctcctgatgt gggtagcatg gaatcactgg
      781 aattgcttta tttgcggagg aataaattgc gtgttctacc tgaatttcct tcttgtaggc
      841 agctaaagga attacaccta gctgaaaacc agatagagaa gttaggggca gagcatcttc
      901 agcacctgca ggccatcctt gtcctggacc taaggggcaa taagctgcgg tctgtccctg
      961 aggaaatggc cctgctgcag tctttggaaa ggcttgacct gagcaacaat gatattagta
     1021 gtctgccctg ctcattggga aatcttcatt tgaaattcct ggcactagaa ggaaatcctc
     1081 taagaaccat tcgaagagaa attatagcta aaggaactca agaagttcta aaatacctgc
     1141 gcagcaagat caaagatgat agaaccaatc aaaatgattc tgttcctgag actgccatga
     1201 cactaccaag tgaagccaga gtcaatatcc atgccatagc cacactaaag ctgctagatt
     1261 atagtgataa acaagcaacc ttgattcctg atgacctatt tgatgccaca aaaacgaccc
     1321 tcatcacttc catcaacttc agcaaaaatc agctgtgcga gattccacaa aggattgttg
     1381 agctgaagga aatggtgttg gatatcaacc tcagttttaa caagctttca tttatatccc
     1441 acgagttatg cttgcttcag aaattgacat ttttagattt aaggaataat tttttaagtt
     1501 ctttgcctga agagatgtca tcactgacaa aactgcaaac gatcaatctt tcctttaaca
     1561 ggttcaaagt gtttcctgaa gttctgtatc gaatctccac actggaagcg gttctgatca
     1621 gtaacaatca ggttggctct gtggaccctc agaagatgaa gctgatggaa aatctgaata
     1681 ctttagacct tcaaaacaat gaccttttgc agattccccc agagcttggg aactgtgtgc
     1741 agctacggac actactgcta gatggaaatc cattccgagt tcctcgagcg gccatattaa
     1801 tgaaaggcac agctgctgtg ctggagtatt tgagagatcg aatccctgcc tgagtaccgc
     1861 tggtttctta ctctgggcat ggtcactcgg gataggacag agccagcctc cagtgtccag
     1921 gtgtcactag acagtcactg tttgggctat ggtcgttcct actaaatgtc tacagtttgt
     1981 gaagtgatgt gaacatttat aatgtcaact gctacagatt ttaaatgttt tataaattca
     2041 ttcctttatg acactgcaag aacttttcat atgattttta taatgaaaaa gcaaccatct
     2101 ttgtaaatct gggttccccc tggtatcttt tcattttcca tcttatatga actgagcaag
     2161 actatataag gtgtaaagtc agcgaacttt tactaaatat tattttttgg catttaaaag
     2221 aaaatcggac ttttcgttgt ccaggatagg acttgctatg tggtcagtgt cagtgcgtgt
     2281 ttatgtttag ggttttggtt ttgactttac attttttttt ttaatgtttt cagtgtcctt
     2341 tattccaatg tgatacatct tattatttcc acaacgttga ttctgaaatc tccttacagt
     2401 ctgattaaaa ctagactggt agttttacag taattttcta aaaaggagtt agatatagcc
     2461 aagcttgatt taataaaagt ccaaatataa acattgttgt ttacactgaa attatcagat
     2521 gcagcttttc agccgtcctg gttcatcatg tgattgagtc gagagtagcc agctcagtag
     2581 aagcatgtgt cagctcagtg tcagcctgcg tgcggagggt ggaggtagag aacctatagg
     2641 cggttgaggt tgttgatctt aggaaaatca gtgctaataa agatacatgc ttcgtgttca
     2701 taataaaagc tacattttta aggtaaaaaa aaaaaaaaaa a
//
