LOCUS       NM_001162983            2327 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus leucine rich repeat containing 38 (Lrrc38), mRNA.
ACCESSION   NM_001162983 XM_144076 XM_915579
VERSION     NM_001162983.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2327)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2327)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL611982.26, BC129963.1, AK045936.1 and AK160116.1.
            
            On or before Jul 8, 2009 this sequence version replaced
            XM_915579.2, XM_144076.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK078190.1, AK160116.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-7                 AL611982.26        137094-137100
            8-1415              BC129963.1         1-1408
            1416-2309           AK045936.1         968-1861
            2310-2327           AK160116.1         1393-1410
FEATURES             Location/Qualifiers
     source          1..2327
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 77.55 cM"
     gene            1..2327
                     /gene="Lrrc38"
                     /gene_synonym="A230053A07Rik"
                     /note="leucine rich repeat containing 38"
                     /db_xref="GeneID:242735"
                     /db_xref="MGI:MGI:2442845"
     exon            1..1062
                     /gene="Lrrc38"
                     /gene_synonym="A230053A07Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             420..1316
                     /gene="Lrrc38"
                     /gene_synonym="A230053A07Rik"
                     /note="leucine-rich repeat-containing protein 38; BK
                     channel auxilliary gamma subunit LRRC38; BK channel
                     auxiliary gamma subunit LRRC38"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 38
                     precursor"
                     /protein_id="NP_001156455.1"
                     /db_xref="CCDS:CCDS51351.1"
                     /db_xref="GeneID:242735"
                     /db_xref="MGI:MGI:2442845"
                     /translation="MSLCVAPRHPTGAAAALGLGSLLVLLGPGRACPAGCACTDPHTV
                     DCRDRGLPSVPDPFPLDVRKLLVAGNRIQQIPEDFFIFHGDLVYLDFRNNSLRSLEEG
                     TFSGSGKLAFLDLSYNNLTQLGAGAFRSAGRLVKLSLANNHLAGVHEAAFESLESLQV
                     LELNDNNLRSLNVAALDALPALRTVRLDGNPWLCDCDFAHLFSWIQENTSKLPKGLDA
                     IQCSLPMEDRRVALRELSEASFSECKFSLSLTDLFIIIFSGVAVSIAAIISSFFLATV
                     VQCFQRCAPNKDTEDEDDDEDD"
     exon            1063..2327
                     /gene="Lrrc38"
                     /gene_synonym="A230053A07Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2198..2203
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrrc38"
                     /gene_synonym="A230053A07Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2220
                     /gene="Lrrc38"
                     /gene_synonym="A230053A07Rik"
ORIGIN      
        1 tgagggtggc gctctgggcg catgccccag acacgcccca tggaaatcgc tccagggatc
       61 cgtcactgaa cttagtcttg agcaccgctg gccaggtctg tgcgacaggt cccacttccc
      121 cgcccgagtg gggtcgctct gggctccctc cacgatctcc acctgtgctt ttgaatgttc
      181 cagagggtca gtttcctgtg cgggtaaatt ctgcgcccag cacctctcat cttcctcctc
      241 cctccccgcc tcccggacac cccgggtcgc tctgtccccg ccgcactctc atcgcccccg
      301 cgcgccccgg cgcagcctcc ccgccctgcg ccgctgccct ggggctctcg gcgccccgga
      361 gccagggccc cgctgcgtcc tccttgctgc gagctgagtc ctccggagtc ccccgggcca
      421 tgagtctctg cgttgccccc cgccacccca cgggcgctgc tgcggcgctg gggctcggta
      481 gcctcttggt gctgctcggg ccgggacgcg cgtgccccgc gggctgtgct tgcaccgacc
      541 cccataccgt ggactgtcgc gatcgcgggc tgcccagcgt gcccgatccc ttccccctgg
      601 acgtgcgcaa gctgctagtg gccggcaacc gcatccagca gatccccgag gacttcttca
      661 tcttccatgg agatctggtg tatctggatt tcaggaacaa ctcgctgcgc tcgctggagg
      721 agggcacgtt cagcggctcg ggcaagctgg cctttctgga cctgagctac aacaacctca
      781 cccagctggg ggccggcgcc ttccgctcgg cggggaggct ggtcaagctg agcctggcca
      841 acaaccatct ggccggtgta catgaggctg ccttcgagag cctggagtcc ttgcaggtgc
      901 tggaactcaa cgacaacaac ctgcgcagcc tcaacgtggc ggctttggat gcgctgccgg
      961 cactgcgcac tgtgcgcctg gacgggaacc cctggctgtg tgactgtgac ttcgctcacc
     1021 tcttctcctg gattcaggag aacacatcca aattgcccaa aggcctcgat gccatccagt
     1081 gttcactgcc catggaggac cggagggtgg ccctgaggga gctatccgaa gctagtttca
     1141 gcgagtgtaa gttcagcctg tctctcacag acctattcat catcatcttc tctggggtgg
     1201 ctgtgtccat tgctgccatc atctccagct tcttcctggc cactgtggtg cagtgtttcc
     1261 agaggtgcgc ccctaacaag gacacggaag atgaggatga tgatgaagat gactgagcca
     1321 cctcctcccg ctctttgctt tcccacactc agccagtggc acctctccaa gggagactga
     1381 tgctgaagac aggagcatca catcactcca ggcagtaaac gggatggagc ttgcctagat
     1441 gcacccgctg gggacagccg atcccagcgt atagaatcag cagagtagag acgcaggaag
     1501 gatggagaga ttcactctta agcagagcca gcctcccagg ctgggggact cgtgtgtgaa
     1561 gataatcaat tcaggcttca tggcttacag ctttacaacc ctcccaagct gaagtgagag
     1621 ctcacagctt ctgacctcag agttgtttgg gccgttctta ttacaagttg cacaatggac
     1681 catgagccct cttccccatg aaagacagta gtgttctcag tgtagattcg tgtcgagctc
     1741 cttcttcaca ggagcaggaa tcgttttctt ctatagaaga tcccaggagc cttgagatgt
     1801 tagaccaaga acaaacacat ctatttgcca tagacaatgt ctgtctcccc tgtgttgctg
     1861 caatgatatc tcacacccaa cgtgatgaac gtgggttgat gcgcgatgac ctgagcccgc
     1921 agtcccgagc tggtgggctg gggacctaga cctgaggcgg aggctcacaa ggggacccag
     1981 tccttcaggg tgttttgaag agggcccttt ggatatgatt ccgtcttgag accgagtgca
     2041 tttactgccc ttataaatca gactttgggg gcctccctgt cccttctatc cagtgaggac
     2101 ccagtgagag ggtctatgaa ccaggaaggg gtctctcaca ggaactcaac catactggtg
     2161 ccctagcctc taccttctag cctcccaaac cgagaggaat aaatgtttgt tatttataaa
     2221 ccctcatgtc tgtgactggg ggggctgagg gggaatagaa gctcaaggat gctaggacac
     2281 catctttagc tgaaatgtta ccaaaaaata aaagcttagg ttttgtc
//
