LOCUS       XM_017316012            4345 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus leucine-rich repeat, immunoglobulin-like
            and transmembrane domains 1 (Lrit1), transcript variant X1, mRNA.
ACCESSION   XM_017316012
VERSION     XM_017316012.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_017316012.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..4345
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21"
                     /note="leucine-rich repeat, immunoglobulin-like and
                     transmembrane domains 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 10 ESTs, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:239037"
                     /db_xref="MGI:MGI:2385320"
     CDS             133..1998
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21"
                     /codon_start=1
                     /product="leucine-rich repeat, immunoglobulin-like domain
                     and transmembrane domain-containing protein 1 isoform X1"
                     /protein_id="XP_017171501.1"
                     /db_xref="GeneID:239037"
                     /db_xref="MGI:MGI:2385320"
                     /translation="MNRTEEQELGLVAKLLKKQRQEDYKSKGARLTHLNSKRTVVCSD
                     PDLTLPPASIPPDTCKLRLERTAIRRVPGETFRPLSRLEQLWLPYNALSELSALMLRG
                     LRRLRELRLPGNRLVTFPWAALRDTPQLQLLDLQANRLSTLPPEAAHFLENLTFLDLS
                     NNQLMRLPEELLDVWAHLKTGPFLSGHHARLILGLQDNPWVCDCRLYDLVHLLDGWVS
                     SNLIFIEARLRCASPRSLAGVAFSQLELRKCQSPELRPGVTSIISPLGSTVLLRCGAT
                     GIPGPEMSWRRANGRPLNGTVHQEVSSDGSSWTLLDLPVVSLFDSGDYICQAKNFLGA
                     SETLISLIVTEPQTSTGYSGIPGVLWARTGEGAEAAAYNNKLVARHVPHMPEHVALAT
                     KPSMPSIKEELALQNFQMDVPGEFSREPSEHQEAQMVRSLKVVGDTYHSVSLVWKAPQ
                     AGNTTAFSVLYAVFGHRDMRRMTVEPGKTSVTIEGLAPKTKYVACVCVRGLVPTKEQC
                     VIFSTDEVVDAEGTQRLINMVVISVAAIIALPPTLLVCCGALRRRCHKCRTGGSAEAS
                     GAYVNLERLGHSEDSSEVLSRSSLSEGDRLLSARSSLDSQVLGVRGGRRINEYFC"
ORIGIN      
        1 caaagacaga aaacactgac ttctgccgtg ccgtgagcat ttccagagtc tctgagagaa
       61 ccaagagatt acggctgctg taggagctgg cttcttaccg ggagatggcc actcctggag
      121 aatttctgct ccatgaaccg gactgaagag caagagttag gcctggtggc caagttactc
      181 aagaagcaga ggcaggagga ttacaagtct aaaggagccc gcctcaccca cctcaattct
      241 aaaaggacag tggtgtgcag cgaccctgac ttgactctgc ctccagcttc gattcctcca
      301 gacacctgca agctgcgctt agagagaacc gccattcgca gggtgccggg agagaccttc
      361 aggcctctca gccgcctgga gcagctgtgg ctaccttaca atgctctcag tgagcttagt
      421 gccctcatgc tcaggggcct gagacgccta cgagagctgc ggctgcctgg gaaccgcctg
      481 gtcacgttcc cctgggctgc gctgagggac actccgcagc tgcagctgct ggacctgcag
      541 gccaatcgcc tctcgacctt gccacccgag gctgcacact tcctggagaa ccttactttc
      601 ctggacctgt ccaataacca gctgatgagg cttcctgagg agctactgga cgtgtgggct
      661 cacctgaaga ccgggccctt cctttccggc catcatgcca ggctaatctt agggcttcag
      721 gacaacccct gggtgtgtga ctgtcggctc tatgacctgg ttcatcttct agatggctgg
      781 gtttcttcaa acctgatctt catcgaggct agactgagat gtgccagtcc acgcagcctg
      841 gctggagtgg ccttcagcca gctggagcta agaaagtgtc agagcccaga gctccgtcca
      901 ggggtgacca gcatcatatc ccctttgggt agcacagtat tgctacgttg tggagcaact
      961 gggatcccag gacctgagat gagctggaga agggccaatg gacgaccact caatggcaca
     1021 gtacaccagg aagtctccag tgacggctca agttggactt tgctagattt gcctgttgtg
     1081 tctctctttg actctgggga ctacatctgc caagccaaga acttcctggg agcttctgaa
     1141 accctgatct ccttgattgt cactgagcca cagacttcta ccggatacag tgggattcca
     1201 ggtgtcctgt gggcaagaac aggggagggg gcagaagctg ctgcctacaa caacaagctg
     1261 gtggccaggc atgttcctca tatgcccgag catgtagccc tggctaccaa gccctcaatg
     1321 cccagcataa aggaggagct ggctctccag aactttcaga tggatgtccc aggagagttc
     1381 tccagagagc catcagaaca ccaggaggca cagatggtca ggtctctcaa ggtagtagga
     1441 gatacttacc acagtgtgtc tttggtgtgg aaggcccctc aagctgggaa cacaaccgcc
     1501 tttagtgtcc tttatgcagt ctttgggcat cgagacatga gaaggatgac tgtggagcct
     1561 gggaagacta gtgtcactat cgagggactt gctccaaaga ccaagtatgt ggcatgtgtc
     1621 tgtgtgcggg gcttggtgcc tacgaaggag caatgtgtca tcttctctac tgatgaggta
     1681 gtggatgcag agggcaccca gcgactcatc aacatggtgg tgatcagcgt ggccgccatc
     1741 atcgcgctgc ctcccaccct gctggtttgc tgtggggctc tccgaagacg ctgccacaag
     1801 tgccgcactg ggggttctgc agaggcctct ggggcctatg ttaatttgga aagactgggc
     1861 catagtgagg acagctcaga agttctgtcc aggagcagcc tcagtgaggg agataggctt
     1921 ctctcagccc gttccagcct ggactcccag gtcttgggtg tcaggggcgg cagacgcatc
     1981 aatgagtact tctgctgagt ctgagtccct gttcacacct gccatccctc ttcagtctca
     2041 tacacttact tttatacctg actgtgtgct cagtcaccct gattgtttgg atatttggta
     2101 acttgtccat ttacatcaac aatagttaac acagggtttt aagcacttac tgtgtgccag
     2161 caagcatcca aagtacttca taggtattta ctcacttaac tttcataata accatttata
     2221 tcaggcatca tttttctctc tcttttccag gagaagaaac aggtgttgag tatttagctt
     2281 gtatcggtca gtttctgctg tctaacaaat gaaagcaaaa actctctggt atgcatcatt
     2341 tagatatgta tttttacact atgtgtctgt aggttgactg gcatggctct gctacatgtg
     2401 ttccactggg gctccgaggt ggagaacaac aatggctact tggggcagac ttttctcaga
     2461 tgccataaga gggaagagca aaaccatgca acacctctga atgtcttcat gtgagactgg
     2521 catgttgctg ttgctcatgt ccatattgta cctgccaaag acagtctcat ggccaaaggc
     2581 aatgttaacg aggcaagcag agacactaat cctctgaaga caacgatgga agacaaaaca
     2641 ttttcggaac aaatttacta catggcccac ttatagtact gccactggac aatggcagcc
     2701 tagctttgga ccaggcagtt ggacaattgg ttctactgaa aagtctttac caacctctat
     2761 actcttacat catgtttgca cttataccag ttcatgcaca catatacaca ggttctctat
     2821 acattagcca tgtttttgaa cacacgcaca cttcacccac acgcatcccc ctcattgaat
     2881 tctaacattt atcctttggg gttctgggag ataatcttgg agagattctt ggagaattta
     2941 cttgtaataa attctaaaga ctgctgctct tttattctca gtatgccaga ctggagagag
     3001 ccaaggggtt tctacaactg aaggcaccat catagtcagt cttgtctcac actcagccca
     3061 tgctcatgga ggagcctttg cagggttttc tgaaattttc ttggttttgg agagtatgta
     3121 ggagcttttc tggtcaccca ccatgcgagt agcaggagaa ttcttgctga gtttcgccta
     3181 tggcatagat tgctgagatg cttgtgcaca ggagtgagtg aacgttccta ctgaaaactc
     3241 tgtttattgt ttgcctactg agaagatggg tagcaagtcc tttggtaaca attgtggact
     3301 tccacagtca gaagtgatcc gaggaaagta tttaaccagc accactcaag ataattgata
     3361 tcatgtgaat attgactaga tgtaaatccc cttattattt ccaaaagacc tcacaacatg
     3421 cccctaacag cccattctag aggttggtaa ttttgatttt tgattttaca gatgaagaaa
     3481 ctaagaacca agtatatgtg cagacaggag aaatgaattt tctttggaat ccatgtcttt
     3541 gacaagtttt tggatgctat gtcttactca ttaatgatct ttgaagtatg gcccacagtt
     3601 tactatgaaa actgaatttt tggtagtcac cgaaacctgg aattagaacc acaagaacac
     3661 aggtgcacac ggacattaga gtcaccaaac ttgatatttt tctgtcacct ccatgaaggt
     3721 tgtatttgat tataacttgt gggtcattac cattagcaag aaaagctact tggttggaca
     3781 gtaatggcct tgtctgcatc agggatcaac atgatatttt ttggcaaaca aaacttgata
     3841 atgaatatta caagctctgt cattgctaat ggaatgggga aaaatataga ctacaggtga
     3901 gttaatgggc atggatgtga tccaataaaa tgtttacaaa aacagataac aaactggaat
     3961 caatatccaa ttagctttac tgcattttgt aaaaggaaaa ccaggaactt gaaagcaata
     4021 tatatatata tatatatata tatatgtata tatacaccca atattgactg agaaacagag
     4081 gaggagaaag gagcagagaa agagaaaaaa atagggatgg gatcaaattt tccagcagtc
     4141 taggagggct gccttcaggg tgtgggtgat cattgcctct aagatgtcca gattcttgat
     4201 ctcaatgtat caactttcct acctgtgttc tgtcttccct gagttttctc ttgtagggaa
     4261 gagtcttctg gagtgttctt gtgggtattt atgttactaa aacaaactcc tctgacaaat
     4321 gaataaataa atggtatctg attta
//
