LOCUS       XM_030255196            5218 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus leucine-rich repeats and
            immunoglobulin-like domains 1 (Lrig1), transcript variant X5, mRNA.
ACCESSION   XM_030255196
VERSION     XM_030255196.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000072.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030255196.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5218
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="6"
     gene            1..5218
                     /gene="Lrig1"
                     /gene_synonym="D6Bwg0781e; Img; LIG-1"
                     /note="leucine-rich repeats and immunoglobulin-like
                     domains 1; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 mRNA, 87 ESTs, 1399 long SRA
                     reads, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 17 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:16206"
                     /db_xref="MGI:MGI:107935"
     CDS             1499..3988
                     /gene="Lrig1"
                     /gene_synonym="D6Bwg0781e; Img; LIG-1"
                     /codon_start=1
                     /product="leucine-rich repeats and immunoglobulin-like
                     domains protein 1 isoform X2"
                     /protein_id="XP_030111056.1"
                     /db_xref="GeneID:16206"
                     /db_xref="MGI:MGI:107935"
                     /translation="MHVLHLEYNSLVEVNSGSLYGLTALHQLHLSNNSISRIQRDGWS
                     FCQKLHELILSFNNLTRLDEESLAELSSLSILRLSHNAISHIAEGAFKGLKSLRVLDL
                     DHNEISGTIEDTSGAFTGLDNLSKLTLFGNKIKSVAKRAFSGLESLEHLNLGENAIRS
                     VQFDAFAKMKNLKELYISSESFLCDCQLKWLPPWLMGRMLQAFVTATCAHPESLKGQS
                     IFSVLPDSFVCDDFPKPQIITQPETTMAVVGKDIRFTCSAASSSSSPMTFAWKKDNEV
                     LANADMENFAHVRAQDGEVMEYTTILHLRHVTFGHEGRYQCIITNHFGSTYSHKARLT
                     VNVLPSFTKIPHDIAIRTGTTARLECAATGHPNPQIAWQKDGGTDFPAARERRMHVMP
                     DDDVFFITDVKIDDMGVYSCTAQNSAGSVSANATLTVLETPSLAVPLEDRVVTVGETV
                     AFQCKATGSPTPRITWLKGGRPLSLTERHHFTPGNQLLVVQNVMIDDAGRYTCEMSNP
                     LGTERAHSQLSILPTPGCRKDGTTVGIFTIAVVCSIVLTSLVWVCIIYQTRKKSEEYS
                     VTNTDETIVPPDVPSYLSSQGTLSDRQETVVRTEGGHQANGHIESNGVCLRDPSLFPE
                     VDIHSTTCRQPKLCVGYTREPWKVTEKADRTAAPHTTAHSGSAVCSDCSTDTAYHPQP
                     VPRDSGQPGTASSQELRQHDREYSPHHPYSGTADGSHTLSGGSLYPSNHDRILPSLKN
                     KAASADGNGDSSWTLAKLHEADCIDLKPSPTLASGSPELMEDAISTEAQHLLVSNGHL
                     PKACDSSPESVPLKGQITGKRRGPLLLAPRS"
ORIGIN      
        1 agcagccggg gcggggcctg gggccgcggg gctggaccgc ggagcggctg gccgctgatt
       61 gttcgcagcg ctgaggcacg gtgcgctccg gccgctccgg gacgggcagg cgcgtggggt
      121 ccacggctat catcagctca gcgccctcag tgagatgccc gcccgcgcca cgcgcagagg
      181 ccgaggctaa gcgttttcag tcctcagagg cggcggctct cggcgtgcgc ccgagctctg
      241 aaggcgactc tcagcgcggc gggaaggacg agcagcggcg gccgggcact cactgcggga
      301 ctccacagag ttcgccgcgc gcggggctcg gcccggatgg gcgcgggggt ggcggtcccc
      361 gcagggtgct gcgaagcggc ccgggcagag cgtgccggct gagcgccgcg gccccggagc
      421 cgactggagt cgggcgtcca tgtcccggcg cggagcctag ctccgagcgc agcccgcgcc
      481 cgcggccgcc cgcacctcgc agccctcgct ccccggcttc gcggcgcgtt ccagacaaga
      541 tggcgcggcc cggtccggga gtgctcggag ccccgcgcct tgcgcctcgc cttctgctct
      601 ggctgctctt gctgctactg caatggccgg agtcagcggg cgcccaggct ggcccgcggg
      661 ccccctgcgc ggccgcctgc acttgcgccg gggactcgct ggactgcagt gggcgcgggc
      721 tggcgacgct gccccgggac ctgccctcct ggacgcgcag cctgtgagta tcgcctttgc
      781 ctctcgtccg ggcgctgtca ctaagacggg gctgctggtg tgctcagccg gagagggtgc
      841 ggagtgcgct ctgtgggctg gggagacttg tgggtggccg agtggaggtc acgcgtggga
      901 gctcgggaga gaggactctg cttctggggt ttgaagaaac ctgagttata acagactctc
      961 cgagatcgac tctgctgctt ttgaggactt gacgaatctg caggaagtgt acctcaacag
     1021 caatgagctg acagccatac catcactggg cgctgcttcc ataggagttg tctctctctt
     1081 tttgcagcac aacaagatcc ttagtgtgga tgggagccag ctgaagtcgt acctgtcctt
     1141 ggaagtgctg gatctgagtt ccaacaacat cacggaaatt cggagctcct gtttcccgaa
     1201 cggcctgcgt ataagggaac tcaacttggc gagcaaccgc atcagcatcc tggagtctgg
     1261 agcatttgat ggtctgtcgc ggtcactgct gactctccgt ctgagcaaaa acaggatcac
     1321 ccagcttcct gtgaaagcgt tcaagctacc caggctgaca caactagacc tgaatcggaa
     1381 tcggattcgg ctgattgaag gcctcacgtt ccaggggctc gacagcttag aggtgctgag
     1441 gcttcagagg aacaacatca gcaggctgac ggacggggcc ttctgggggc tgtctaagat
     1501 gcacgtgctg cacctggagt acaacagtct ggtggaagtg aacagtggct ccctctatgg
     1561 cctcacagcc ctgcaccagc tgcacctcag caacaactcc atctctcgaa ttcagcgtga
     1621 tggctggagc ttctgccaaa agctgcatga gttgattctg tccttcaaca acctcacgcg
     1681 gctggatgag gagagtctag cggagttgag cagcctcagt atcctgcgcc tcagtcacaa
     1741 cgccatcagt cacattgctg aaggcgcctt caagggactc aagagtctgc gggtcttgga
     1801 cctggaccat aacgagatct cgggtacaat cgaggatacc agtggtgcct ttacggggct
     1861 tgacaacctc agcaagctga ctctgtttgg aaacaagatc aaatctgtgg ctaagagagc
     1921 cttctcgggc ctggaaagcc tggaacacct gaaccttgga gagaatgcaa tcaggtctgt
     1981 ccagtttgat gcctttgcaa agatgaagaa ccttaaagag ctctacatca gcagtgagag
     2041 cttcctgtgt gactgccagc tcaagtggct gcccccatgg ctaatgggta ggatgctgca
     2101 ggcctttgtg acagccacct gtgcccatcc agagtcgctg aagggccaga gcattttctc
     2161 agtgctgcca gacagctttg tgtgtgatga ctttccaaag ccacagatca tcacccagcc
     2221 tgagacgacc atggctgtgg tgggcaagga catccgtttc acatgctccg cagccagcag
     2281 cagcagctca ccaatgacct tcgcctggaa gaaggacaat gaggtcctgg ccaatgcaga
     2341 catggagaac tttgcccacg tccgtgcaca ggacggcgaa gtgatggagt ataccactat
     2401 cctgcacctc cgtcacgtca cctttgggca cgagggccgc taccagtgta tcatcacaaa
     2461 ccactttggc tccacatact cccacaaagc caggctcact gtgaatgtgt tgccatcatt
     2521 cactaaaata ccccatgaca ttgccatccg gactggcacc acagcccgcc tcgagtgtgc
     2581 tgccacgggc caccctaacc ctcagattgc ctggcagaag gatggaggca ccgatttccc
     2641 ggcagctcgt gagcgacgca tgcatgttat gccagacgat gatgtgttct tcatcactga
     2701 tgtgaaaata gacgacatgg gggtctacag ctgcactgcc cagaactcgg caggctcggt
     2761 ttcagccaac gctaccctca cagtcttaga aactccatcc ttggcagtgc ctctggaaga
     2821 ccgtgtggta actgtgggag aaacagtggc cttccagtgc aaagcaaccg ggagccccac
     2881 accacgcatc acctggctta agggaggtcg cccattgagc ctcacagagc gccaccattt
     2941 cactccaggc aaccagctgc tggttgttca gaatgtgatg atagacgatg cagggcggta
     3001 tacctgtgag atgtctaatc ccctgggcac tgagcgagca catagccagc tgagcatttt
     3061 acctacccct ggctgccgga aggatgggac caccgtaggc atcttcacca ttgctgtggt
     3121 gtgcagtatt gtcctgacct cgctggtgtg ggtgtgcatc atctaccaga ccaggaagaa
     3181 gagcgaggag tacagcgtca ctaacacaga tgaaaccatt gtgcctccag atgttccaag
     3241 ctacctctcc tctcagggaa ccctttctga ccggcaggaa actgtggtca ggactgaggg
     3301 tggtcatcag gccaatgggc acattgaaag caatggtgtg tgtctgagag acccgagcct
     3361 cttcccagag gtcgacattc atagcactac atgcaggcag cccaagctgt gtgttggata
     3421 cactagagag ccctggaagg tgacggagaa agccgacagg acagctgccc cacatacaac
     3481 agcacacagt ggctctgctg tatgtagtga ctgcagtact gacacagcct accatcccca
     3541 gcctgtgccc agagacagtg ggcagccagg cacagcgagc agccaagagc tcaggcagca
     3601 tgaccgggaa tattctccac accatcctta cagtgggact gcggatgggt ctcataccct
     3661 ctctgggggg tccctctatc caagcaacca tgacagaata ctgccatcct tgaagaacaa
     3721 ggcggcgtct gcagatggga acggagattc ctcttggact ttagcaaagt tacatgaagc
     3781 agactgcata gacctaaagc cttctcctac gttagcttca ggcagcccag agctcatgga
     3841 agacgccata tctactgaag cccagcactt gcttgtttcc aatggccacc tccccaaggc
     3901 ctgtgactcc agccctgaat ctgtgccact gaaagggcag atcactggga aacggagggg
     3961 accactgcta ttggcaccga gaagctaggc ttcatctacc tcagctcttt taaagcagtc
     4021 gctacaggaa agaggtagga gaggccgtgg aaagcttgtg tccagacgtc actccggaca
     4081 gtccgacttc cgtgtggaat gtcagtcagt cggctagagg agtggcatct ggagctcaga
     4141 aacgtgagag actatttgtg tacaaaaggc aggaaaaagt atttgatacc actgtacata
     4201 agagttttca gagatttcat atatattata tatcttttac agagactatt ttaatcctta
     4261 gcgcatgggt cccgcttttg gtgatatttt cacattaggt tgctgtctaa ttttggagag
     4321 ggtcaggaat cgttctggtg ccttaatgca cagctggaat tcaggtaaac acatcagctg
     4381 ttgctggcgg ttggaaagga gggcatcttg gctgtgtggc acttagtggt cagattcgag
     4441 tgcactggcc agacctatgc aggcgtggtg ttggcagcct cactgtagag cagggtgcac
     4501 gggtctgtag ttgaggacga gattgagagc tgttaatcca ccaaatgcaa tggctcagaa
     4561 caattaagca ctgcctttcg tctttctttg taactcactt ggtaaaagca aatgtcttgt
     4621 ctccttcagt ggttctttga agcttagtga ggcggaggct gccagtgttg gtacctgtgg
     4681 attttccaat agtgagggtt agctctgcct ccagggcccg ctaagttctg ctgagcaggc
     4741 ctgtccacgc tgttccttac cggtgagact gggcttggac tgtacaagac ttgagtccta
     4801 gacctgggtg tatttgcact ttggggccct gttgctagcc atcttgtgag tgccaatgta
     4861 taatgcagta aagactacat ggaaacacaa actcagtcct taaaacccca ggagttgagg
     4921 ggaagtgttg gcacagtgat ggcctgtgtc accgtgtagt gtcataggcc atcactgtgc
     4981 cagagcaagc acgctgagaa ggctagtctc catagttgat ggttaatgtt acttccacaa
     5041 aatatgtgaa tttgctgctt ctgagaggca atgtgaaaga ggaagtatta ctttttatgt
     5101 acagagttat ttatttatag aaattttggt acagtgtaca ttgaaaacat gtaaaatatt
     5161 gaagtgtcta acaaatggca taaagtgtct ttaataaagg ttcatttata aatactaa
//
