LOCUS       NM_001310709             837 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus leucine rich colipase-like 1 (Lrcol1), transcript
            variant 1, mRNA.
ACCESSION   NM_001310709 XM_006535031
VERSION     NM_001310709.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Sun,J., Lu,Y., Nozawa,K., Xu,Z., Morohoshi,A., Castaneda,J.M.,
            Noda,T., Miyata,H., Abbasi,F., Shawki,H.H., Takahashi,S.,
            Devlin,D.J., Yu,Z., Matzuk,R.M., Garcia,T.X., Matzuk,M.M. and
            Ikawa,M.
  TITLE     CRISPR/Cas9-based genome editing in mice uncovers 13 testis- or
            epididymis-enriched genes individually dispensable for male
            reproductiondagger
  JOURNAL   Biol Reprod 103 (2), 183-194 (2020)
   PUBMED   32588039
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JQ258939.1 and BX630968.1.
            
            On Jul 18, 2015 this sequence version replaced XM_006535031.2.
            
            Transcript Variant: This variant (1) represents the shorter
            transcript and encodes the protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JQ258939.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-764               JQ258939.1         1-764
            765-837             BX630968.1         3-75                c
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 53.5 cM"
     gene            1..837
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /note="leucine rich colipase-like 1"
                     /db_xref="GeneID:381667"
                     /db_xref="MGI:MGI:2686525"
     exon            1..100
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /inference="alignment:Splign:2.1.0"
     exon            101..217
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..598
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /note="leucine-rich colipase-like protein 1; colipase-like
                     protein 3"
                     /codon_start=1
                     /product="leucine-rich colipase-like protein 1 precursor"
                     /protein_id="NP_001297638.1"
                     /db_xref="CCDS:CCDS80364.1"
                     /db_xref="GeneID:381667"
                     /db_xref="MGI:MGI:2686525"
                     /translation="MSVSVWPPLLLLLLLLLLWAVPTFQDKNTRVSAYKGIGEMCRNN
                     SECQSDCCVTNSLNPQKFCTSQTVFLECVPWRKPNGFLCEENTECHSNCCIRTSSNPD
                     RFCSSKTIFMQCISWRKPEGAICQHHLECWDLCCLPLSENSPSSHCTKRTGLLALCLP
                     V"
     exon            218..343
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /inference="alignment:Splign:2.1.0"
     exon            344..469
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /inference="alignment:Splign:2.1.0"
     exon            470..595
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /inference="alignment:Splign:2.1.0"
     exon            596..837
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /inference="alignment:Splign:2.1.0"
     regulatory      813..818
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /note="hexamer: AATAAA"
     polyA_site      837
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3; Gm1679"
                     /note="major polyA site"
ORIGIN      
        1 gctaacctgt aaccctctac ttcaaggctg acgtctgctt ggaaactgca gtttggctgc
       61 tctcgctgca cagaggagca agtggacctg aggcaaggag gtccaacgtg agatgtctgt
      121 ctcggtgtgg ccgccgctgc tgctgctgct gctgctgctg ctgctctggg ctgtacccac
      181 attccaggat aagaacacaa gggtttcagc ctacaagggg atcggagaga tgtgtcgaaa
      241 caattctgag tgtcagagcg actgctgtgt caccaacagc ttgaacccac agaaattctg
      301 cacctcccag accgtgtttt tggaatgtgt gccctggagg aagccaaatg ggttcctctg
      361 tgaagaaaac acagaatgcc acagcaactg ttgcatcagg actagcagca acccagacag
      421 gttctgctca tcaaagacca tcttcatgca gtgtatatct tggcgcaagc ccgaaggagc
      481 catatgccaa caccaccttg aatgctggga cctgtgctgc ctcccactga gcgagaacag
      541 cccttcttcc cactgcacaa agcgcaccgg gctcctggct ctctgcctgc cagtctgaat
      601 gaacaagatc ttgtgtgata cagaacccaa actggacttc agagaccaga aagtgctttg
      661 ctcacatcca gactgttccc ttatttgggt tctgaaaatc tgtaggaatt agagctctct
      721 gtcgcttgct gttaatgtga attccatgag tcccacacat gaagcatctg ggggaaaaaa
      781 atcacaggat tgctgctgag ttactgcacg taaataaaaa ctcctggttt acaagga
//
