LOCUS       NM_029007               3402 bp    mRNA    linear   ROD 29-JUL-2024
DEFINITION  Mus musculus LRAT domain containing 1 (Lratd1), mRNA.
ACCESSION   NM_029007
VERSION     NM_029007.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3402)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3402)
  AUTHORS   Hoffmann,S., Schmitteckert,S., Raedecke,K., Rheinert,D.,
            Diebold,S., Roeth,R., Weiss,B., Granzow,M., Niesler,B.,
            Griesbeck,A., Eckstein,V., Zimmermann,W.H., Just,S. and
            Rappold,G.A.
  TITLE     Network-driven discovery yields new insight into Shox2-dependent
            cardiac rhythm control
  JOURNAL   Biochim Biophys Acta Gene Regul Mech 1864 (4-5), 194702 (2021)
   PUBMED   33706013
REFERENCE   3  (bases 1 to 3402)
  AUTHORS   Kamino,H., Yamazaki,Y., Saito,K., Takizawa,D., Kakizaki,S.,
            Moore,R. and Negishi,M.
  TITLE     Nuclear receptor CAR-regulated expression of the FAM84A gene during
            the development of mouse liver tumors
  JOURNAL   Int J Oncol 38 (6), 1511-1520 (2011)
   PUBMED   21424122
  REMARK    GeneRIF: FAM84A is up-regulated by CAR during the development of
            liver tumors.
REFERENCE   4  (bases 1 to 3402)
  AUTHORS   Sansom,S.N., Griffiths,D.S., Faedo,A., Kleinjan,D.J., Ruan,Y.,
            Smith,J., van Heyningen,V., Rubenstein,J.L. and Livesey,F.J.
  TITLE     The level of the transcription factor Pax6 is essential for
            controlling the balance between neural stem cell self-renewal and
            neurogenesis
  JOURNAL   PLoS Genet 5 (6), e1000511 (2009)
   PUBMED   19521500
REFERENCE   5  (bases 1 to 3402)
  AUTHORS   Muhlfriedel,S., Kirsch,F., Gruss,P., Chowdhury,K. and Stoykova,A.
  TITLE     Novel genes differentially expressed in cortical regions during
            late neurogenesis
  JOURNAL   Eur J Neurosci 26 (1), 33-50 (2007)
   PUBMED   17614941
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC005488.1.
            
            On Jun 9, 2003 this sequence version replaced NM_029007.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC005488.1, SRR1660817.295640.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3402
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="12"
                     /map="12 6.93 cM"
     gene            1..3402
                     /gene="Lratd1"
                     /gene_synonym="2310003N02Rik; 4731402F03Rik; Fam84a; Nse1"
                     /note="LRAT domain containing 1"
                     /db_xref="GeneID:105005"
                     /db_xref="MGI:MGI:2145011"
     exon            1..217
                     /gene="Lratd1"
                     /gene_synonym="2310003N02Rik; 4731402F03Rik; Fam84a; Nse1"
                     /inference="alignment:Splign:2.1.0"
     exon            218..3380
                     /gene="Lratd1"
                     /gene_synonym="2310003N02Rik; 4731402F03Rik; Fam84a; Nse1"
                     /inference="alignment:Splign:2.1.0"
     CDS             254..1132
                     /gene="Lratd1"
                     /gene_synonym="2310003N02Rik; 4731402F03Rik; Fam84a; Nse1"
                     /note="protein FAM84A; family with sequence similarity 84,
                     member A"
                     /codon_start=1
                     /product="protein LRATD1"
                     /protein_id="NP_083283.2"
                     /db_xref="CCDS:CCDS25820.1"
                     /db_xref="GeneID:105005"
                     /db_xref="MGI:MGI:2145011"
                     /translation="MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEDL
                     DERGQPDKFGVKGPPGCSPCPESPSRHHHHLLHQLVLNETQFSAFRGQECIFSKVTGG
                     PQGADLSVYAVTALPAICEPGDLLELLWLQPATEQPAPAPHWAVYVGGGQIIHLHQGE
                     IRQDSLYQAGAANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAW
                     CRFGKREFKAGGEVPAGTQPPQQQYYLKVHLEENKVHTARFHSLEDLIREKRRIDASG
                     RLRVLQELEDFVDDKE"
     regulatory      3361..3366
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lratd1"
                     /gene_synonym="2310003N02Rik; 4731402F03Rik; Fam84a; Nse1"
                     /note="hexamer: ATTAAA"
     polyA_site      3380
                     /gene="Lratd1"
                     /gene_synonym="2310003N02Rik; 4731402F03Rik; Fam84a; Nse1"
                     /note="major polyA site"
ORIGIN      
        1 caggacttgc caggtggagc agacgcccaa gccagcgtag acacggagcg catccgcacc
       61 gctctgggta cctcacctca ctgctcgtct ccggatagat cggaaccgca gtcccacgcg
      121 actccaggac ccactcgcca ctgccgcctc cacagcaccc atggggacct ggagacttta
      181 aaaggagttt ggggtttcgg gcgcagggaa atcacggatc tcagttgctg gccctggcct
      241 cgccgcgtca ttgatgggca accaactgga ccgcatcacc cacctcaact acagcgagtt
      301 gcccactggg gacccatctg ggattgagaa ggacgagctg cgagtcgggg ttgcctactt
      361 cttctcggat gaggaggagg acctggacga acgcgggcag ccggacaagt ttggtgtgaa
      421 gggcccccca ggttgcagcc cttgcccaga gagccccagc cgccaccacc accacctgct
      481 gcaccagctc gtcctcaacg agactcagtt ctccgccttc cggggccagg aatgcatctt
      541 ttccaaagtg accggcggcc ctcagggcgc cgacttgagt gtctacgcgg tcactgcgct
      601 gccggcgatc tgcgagccag gcgacctgct agagctcttg tggctacagc cggcgaccga
      661 gcagcccgcg ccagcccctc actgggccgt ctacgtgggc ggcgggcaga tcatccacct
      721 gcaccaaggc gagatccgcc aggacagcct gtaccaggcg ggcgcggcca acgtgggccg
      781 ggtggtgaat agctggtacc gctaccgccc gctggtggcc gagctagtgg tgcagaacgc
      841 ctgtggccac ctgggcctca agagcgagga gatctgctgg acgaactccg agagcttcgc
      901 tgcctggtgc cgctttggaa agcgcgagtt caaggctggc ggggaggtcc ccgcaggaac
      961 gcagccgccg caacagcagt attatctcaa agtgcatctg gaggagaaca aagtccacac
     1021 ggcccggttc cacagcctgg aggacctcat ccgcgagaag cgtcgcatag acgccagtgg
     1081 ccgcctgcga gtgctgcagg agcttgagga ctttgtggac gacaaggagt agcctcagag
     1141 gggcagctcg gcgtgccagt tcccacgccc ggagttccct ttcggtcccc gcagttctgc
     1201 accccatgtt cccctaacgc gcccgcccag ggccagcggc tggaagcttc gggaactcac
     1261 caccacccac cgcactgggc gggagcagct gcgcgctcct aagacaaccc tggtgttggt
     1321 gatcatgcca gggtaatcca gcctgcgcct ctgccctggg ttgtgaaggg aaagagggag
     1381 tgggcaaaag gggagcaagg acactacctt tccagggagc caagggtcag tgactcttct
     1441 gcagacaggg caaatatcct tagtcacagg gaaccgtcac ccaccacccc cagatgtgca
     1501 cacacaaacc agtcggaggt gagagttggt cttttcagga cacaattcaa ctcccgaatg
     1561 gagagtggat gtgcccccgg atatcagaat tcccatgaaa ccgagcctgt ctctgtactt
     1621 tggagcactt cagggactcc aggttaccct gaggctgcct ggaactgtct tgcagctctc
     1681 cagcccagag tctcctgaca aagcattcca ggctgagcta gataggattg acttctcagt
     1741 ttgagcaact ggaagccgat gccattcccg gcttgaccga cacttgccag aaggaaagcc
     1801 ttctgggtcc cgggaggaaa atggttgaag cacctttttg ggagaggagg gcctgctggc
     1861 tccggaaaag gagctaattc acctggcctg tgggcacttg aacttaggaa ggaggaggct
     1921 ttttgctcgg aagcccttga ttgcttccct tctcactcag agtcctgtat tcagcgggac
     1981 tgaaggagag ggaggcaggg aagatctaca acattccaga aaccagcatt aggacagcct
     2041 agccagtgtc tttagtttgg cttttcctaa ctagaaggca ggaggcagga ggcaggtgga
     2101 gattgtttgt aaaatgaaac agcagttttc caacgatatc aacaaagcct acagtgtcga
     2161 tgcttctctt gatcattttt agtaacatgc taatgaaatt tcaaattgaa atttttattt
     2221 tcatggcttt aatccatgat agcttaaata ctgggggcca ttaggagtgg aatttagcta
     2281 agaccttagc tgacattgct ttcactctgg tttttctcaa ctcttatgag aattctgttt
     2341 ggggatatta taattattcc tttttttttt ttttttcctg gctttacaaa gtaggcctgc
     2401 aatggtggag ctgtttatta gtgtgtatat tgtactgaat tttttcagtt caagggtctg
     2461 ctgctttggt gaaaattgct agcaagttcc atgagggttc ttttcttcat tctgtttacc
     2521 atcatcatct catctttgca ttcccccctc tcctcacctc ttgatccccc ttgaaaggaa
     2581 tttagagttc atgggctttg gggcccgctt ttgtagcttg tcctgatgtt tatttctgag
     2641 aacagggaag cgctcttaga agcaggacag aatgtgtgtc tttctaaaca tgaaggttat
     2701 gtgacgctcc tttctttggg caagagtttg tggatttttc tccaaggggt acaaccccag
     2761 cctaactgat cgttacttga ttctttgtgt tacacacacc ttggaaggtg cacagtctct
     2821 catgagggag tttgtcaaat aatgatgttt agctcatggt tgcaagcaat tggatactat
     2881 ggtttcattg aacagcaaac actatgtcca aagccacttt cttggcattt caaaactaat
     2941 gcaataaaaa ctagtagaag ttagcaggca gggaaatgcc atttccatgg taaatggttt
     3001 gtttctgttt tctggggatt tttgttgttt tattttgttt cattttgttc tcatgctgga
     3061 ttcattctct gatcttgagt caaaaggtca aatcaatgaa atatgaacta aagtattttt
     3121 ctgaagccaa tcgagtgatt tattttttaa aactgcttat gttttttctt tcagcacata
     3181 caacagcaaa acttttgtaa acttaacctt tgcatgtatg gagaactgaa agtcatttat
     3241 ttctctaact tagtcttttg gcaaatgaca gattgatgac cataaaccga attctttctt
     3301 gtgtctacac acaccatatc ctttcctgtg tcctactact gtatcttggc tccctgctga
     3361 attaaatacc atcctaagca aaaaaaaaaa aaaaaaaaaa aa
//
