LOCUS       XM_036164834            2639 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus ligand of numb-protein X 1 (Lnx1),
            transcript variant X1, mRNA.
ACCESSION   XM_036164834
VERSION     XM_036164834.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000071.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="5"
     gene            1..2639
                     /gene="Lnx1"
                     /gene_synonym="Lnx"
                     /note="ligand of numb-protein X 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 48 ESTs, 205 long SRA reads, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:16924"
                     /db_xref="MGI:MGI:1278335"
     CDS             282..2468
                     /gene="Lnx1"
                     /gene_synonym="Lnx"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase LNX isoform X1"
                     /protein_id="XP_036020727.1"
                     /db_xref="GeneID:16924"
                     /db_xref="MGI:MGI:1278335"
                     /translation="MNQPDLADDPDPSPEPLCIVCGQNHSPEENHFYTYTEDVDDDLI
                     CHICLQALLDPLDTPCGHTYCTLCLTNFLVEKDFCPVDRKPVVLQHCKKSSILVNKLL
                     NKLLVTCPFTEHCTEVLQRCDLQHHFQTSCKGASHYGLTKDRKRRSQDGCPDGCASLM
                     ATTLSPEVSAAATISLMTDEPGLDNPAYVSSVEDGEPVANSSDSGRSNRTRARPFERS
                     TMRSRSFKKINRALSALRRTKSGSVVANHVDQGRDNSENTTVPEVFPRLFHLIPDGEI
                     TSIKINRADPSESLSIRLVGGSETPLVHIIIQHIYRDGVIARDGRLLPGDIILKVNGM
                     DISNVPHNYAVRLLRQPCQVLRLTVLREQKFRSRSNAHVPDSYGPRDDSFHVILNKSS
                     PEEQLGIKLVRRVDEPGVFIFNVLNGGVADRHGQLEENDRVLAINGHDLRFGSPESAA
                     HLIQASERRVHLVVSRQVRQSSPDIFQEAGWISNGQQSPGPGERNTASKPAATCHEKV
                     VSVWKDPSESLGMTVGGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVNGIE
                     LTEVSRTEAVAILKSAPSSVVLKALEVKEQEAQEDCSPAALDSNHNVTPPGDWSPSWV
                     MWLELPQYLCNCKDVILRRNTAGSLGFCIVGGYEEYSGNKPFFIKSIVEGTPAYNDGR
                     IRCGDILLAVNGRSTSGMIHACLARMLKELKGRITLTIASWPGTFL"
ORIGIN      
        1 gagaagcttt tgtcttgctg ggctaatagt acttcctccc acccccacct cctgcctcga
       61 aaaacctgca cttgaaagcc acctgtacac cgaagttgag accggtcaca gctcaggcgg
      121 ccctagacgc ttctggcaca gggatggagg ctggctggtc actgctgctt tgaaagtccc
      181 aaacatcttt gaacagggtt gcatgtgggt gactcttaga atatcttgac ctgctcctga
      241 ggaaatactg ctttcctgag tttcctgaac cctacacagc catgaaccaa ccggaccttg
      301 cagatgaccc agatcccagt cccgagcctc tgtgcatagt gtgtgggcaa aaccactccc
      361 cagaggaaaa ccacttctac acgtacacag aggatgtaga tgacgacctc atatgccaca
      421 tctgtctgca agcattgctg gaccctctgg acactccatg tggacacacc tactgcaccc
      481 tgtgtctcac caacttcctg gtggagaagg acttctgccc tgtggatcga aagcctgtgg
      541 ttctgcagca ctgcaagaaa tccagtatct tggtcaacaa gcttctcaat aagctgttgg
      601 tcacctgccc gttcacggag cactgcactg aggtgctaca gcgctgtgat ctccagcatc
      661 atttccagac aagctgcaaa ggggcctccc actatggcct gaccaaggac aggaaaaggc
      721 gctctcaaga tggctgtcct gatggttgcg ccagcctcat ggcaacgacg ctctccccag
      781 aggtttctgc agccgccacc atctctttaa tgacagatga gcctggccta gacaaccctg
      841 cctacgtgtc ctcggtggag gatggtgagc cagtagccaa ctcctcagac tctggccgga
      901 gcaaccggac tagggcacgg ccctttgagc gctccactat gagaagccgg tctttcaaga
      961 agatcaaccg agctctaagt gctctccgga ggacgaagag cgggagtgtc gttgccaacc
     1021 atgttgacca gggcagggac aactctgaga acaccactgt ccccgaagtc ttcccaaggt
     1081 tgtttcacct gattccagat ggtgaaatta caagcatcaa aatcaacaga gcggatccca
     1141 gcgaaagcct ctccataagg ctggtggggg gcagcgagac gccgctggtc cacatcatca
     1201 tccagcatat ttatcgcgat ggagtgattg ccagagatgg acggctgctg ccaggagaca
     1261 tcattctcaa ggtcaacggc atggacatca gcaatgtccc tcataactat gccgtgcggc
     1321 tcctgcggca gccctgccag gtgctgcggc taacggtgct gcgggagcag aagttccgta
     1381 gcagaagcaa tgcgcacgtg ccggactcct atggacctcg ggatgacagc ttccatgtaa
     1441 tcctcaacaa aagcagcccc gaggagcagc ttggcataaa gctggtgcgc cgggtggatg
     1501 agcccggcgt gttcatcttc aacgtgctaa atgggggtgt cgccgaccga cacggccagc
     1561 tggaggagaa tgaccgtgtg ctggccatca acgggcatga ccttcgattt ggcagtccag
     1621 agagtgcagc tcatctgatt caggccagtg aaagacgcgt ccatctcgtc gtgtcccgcc
     1681 aggttcgaca gtccagccca gacatctttc aagaagctgg ctggatcagc aatggccagc
     1741 aatccccagg cccaggagag aggaacacag cttctaagcc tgcagccacc tgtcatgaga
     1801 aggttgtaag tgtctggaaa gaccccagcg agtctctcgg catgaccgtc ggagggggag
     1861 catcccacag ggaatgggac ttgcccatct atgtcatcag tgttgaaccc ggcggagtca
     1921 taagcagaga cgggagaata aaaacaggtg acattttatt gaatgtgaat gggattgagc
     1981 tcacagaggt cagccggaca gaggccgttg ccatactgaa gagcgcaccc tcctcagtgg
     2041 tactcaaagc cttggaagtc aaggaacagg aggcccagga agactgcagc ccagcagccc
     2101 tggactccaa ccacaacgtg accccgcctg gtgactggtc cccatcctgg gtcatgtggc
     2161 tggaattacc acagtactta tgtaactgta aagatgtgat actgcgaagg aacacagctg
     2221 gaagcctggg cttctgcatt gtgggaggtt atgaagaata cagtgggaac aaaccttttt
     2281 ttatcaagtc cattgttgaa ggaacacctg catacaatga cggaagaatc agatgtggtg
     2341 acattcttct cgctgtcaac ggtagaagta catcgggtat gatacacgct tgcctggcca
     2401 ggatgctcaa ggaacttaaa gggagaatta ctctgaccat tgcttcttgg cctggtactt
     2461 ttttataaaa tcaatgatgg atcttagaaa aaccacagat aggctaggta aaattgtatt
     2521 tatcttgtca atttttatat ttaaagaata tattgtaaaa aatgccagaa aagtatgata
     2581 ttatgaaaag ttacacctca gagactgttc tcaaaaataa aaactagtga taattttta
//
