LOCUS       NM_001013374            2330 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus lectin, mannose-binding 2-like (Lman2l), transcript
            variant 2, mRNA.
ACCESSION   NM_001013374 XM_129848
VERSION     NM_001013374.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC084391.1 and BC046969.1.
            
            On Jul 15, 2015 this sequence version replaced NM_001013374.1.
            
            Transcript Variant: This variant (2) lacks an alternate in-frame
            exon compared to variant 1. The resulting isoform (2) lacks an
            alternate in-frame exon compared to variant 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC046969.1, SRR13862062.202667.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-32                AC084391.1         152235-152266
            33-2330             BC046969.1         1-2298
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 15.26 cM"
     gene            1..2330
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /note="lectin, mannose-binding 2-like"
                     /db_xref="GeneID:214895"
                     /db_xref="MGI:MGI:2443010"
     exon            1..222
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1082
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; LMAN2-like protein"
                     /codon_start=1
                     /product="VIP36-like protein isoform 2 precursor"
                     /protein_id="NP_001013392.1"
                     /db_xref="CCDS:CCDS14878.1"
                     /db_xref="GeneID:214895"
                     /db_xref="MGI:MGI:2443010"
                     /translation="MAAASRPSWWQRWRRRAWARDGAKLLLFLLLLGSGPGPRHVRAG
                     QAVEYLKREHSLSKPYQGVGTSSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVP
                     CFLKDWELQVHFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTY
                     PNEEKQHERVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNIRYDTFLVIRYVK
                     RHLTIMMDIDGKHEWRDCIEMPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTGV
                     RTPEEEKLHRDVFLPSVDNLKLPEMTVPPTPLSGLALFLIVFFSLVFSVFAIVIGIIL
                     YNKWQDQSRKRFY"
     exon            223..341
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     exon            342..459
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     exon            460..542
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     exon            543..704
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     exon            705..819
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     exon            820..939
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     exon            940..2257
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2232..2237
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /note="hexamer: CATAAA"
     polyA_site      2253
                     /gene="Lman2l"
                     /gene_synonym="A630028F14Rik; VIP36-like; VIPL"
                     /note="major polyA site"
ORIGIN      
        1 ggggcgggct ttttgatgaa gggccggcgg tgggaaagat ggcggcggct tcgagaccct
       61 cctggtggca gcggtggcgg cggcgcgcgt gggctcggga cggggccaag cttttgctct
      121 ttctccttct gttggggtct gggccggggc cgcggcatgt cagggcgggt caagcggtgg
      181 agtacttgaa acgggagcac tcgctgtcga agccctacca gggtgtggga acaagcagtt
      241 cttcgctatg gaacctgatg ggcaacgcca tggtgatgac acagtacatc cgcctcactc
      301 cagatatgca aagtaaacag ggtgccttgt ggaaccgggt gccatgtttc ctgaaagact
      361 gggaactgca ggtgcacttc aagattcacg gccaagggaa gaagaatctg cacggagacg
      421 gcttggcaat ctggtacaca aaggaccgaa tgcagccagg gcctgtgttt ggaaacatgg
      481 acaaatttgt ggggctggga gtgtttgtag acacctatcc caatgaggag aagcagcacg
      541 agcgggtatt cccctacatc tcagccatgg tgaacaacgg ctccctcagc tatgatcacg
      601 agcgggatgg gcggcctaca gagctgggtg gctgcacagc cattgtccga aatatccgtt
      661 atgacacctt cctcgtgatt cgctatgtca agaggcatct gacgataatg atggatattg
      721 atggcaaaca tgagtggagg gactgcattg agatgcccgg ggtccggctc ccccggggct
      781 attacttcgg cacttcctcc attactgggg atctctctga taaccatgat gtcatttccc
      841 tcaagttgtt tgagctgact ggagtgagga ccccagaaga agaaaagcta catcgagatg
      901 tattcctgcc ctcggtggac aatctgaagc tgccagagat gacagtgcca ccaacgcccc
      961 tgagtggcct ggctctcttc cttattgtct tcttctcctt ggtgttttcc gtatttgcca
     1021 ttgtcatcgg gatcatactc tacaacaaat ggcaagacca gagccggaaa cgcttctact
     1081 gagcccgctg ccatcagtcc ctctacggtg tttaccataa ggtgtgggtc tgagcataca
     1141 gcctagcgag tcggcccatt gttcagggac tgtgttctgt cactggagat ttgaatgcta
     1201 ggagcctgca tcctcatggt catccacggg aacatctcac tggcccagga taccaccaca
     1261 gggccgagca gctgtggcat gcctttccct ggagtccttc catttccgag tacagagaca
     1321 tggagaaata cctgctgtga tgcctaaatt acacaattgg gcagatagcc taagtgtgga
     1381 ctggacacag taggccttcc attgcatttt agaattccca aataggaaac cagaaccggt
     1441 acactctgga gacccactta ctggtctttg ctttgcccat gcctctttct acttcaggag
     1501 ctccttggca atctggatgg agacttctcc ctcacccgcc tgtctccctc cactcaccgt
     1561 cctctttata tgcatcctta gctaggaaag aagtttgccg ctctcattag ctggacctgg
     1621 ggcttcctgc agcctctcat tgcttcagcc tcttctctgc tgggtggatc ctgtttctga
     1681 ctgtggctgt gtcttctgct ttcctcatca aaggaaacct tcaggccttt ggatggtttg
     1741 gctaaaagtt gttacaactc aagagaagct tggaggagtt gacagatgct gtgaggttaa
     1801 ctctggaatc atccaggtcc aggtgtgcct cagagagcag tgttggctgc gtctggacct
     1861 gctggagcct gcttagtcgc atgtgttgtg tttgtcctga ttctgctctg agtgttggaa
     1921 gtgataagca gctttcttct tactccctgg acttggacat ggccccaaga tgcttggcct
     1981 cttactaaga agaaacagtt ggtaatctgt tacacatctc tgagagtgaa agcccttcat
     2041 cctctgtgcc tggaaaagtt gtggtcctgg agcagcagca cagcttgagt gcccttgtgt
     2101 gtcacctatt acactgcctt attccacaag ggccacatgc tgctcaccta tcttctctgt
     2161 ggttaaattg gtcacaggct agtctccctg gagggcctgg cacagttctc tgtagcccga
     2221 ggaaaaggct tcataaagta gctgatggaa ccactcaaaa aaaaaaaaaa aaaaaaaaaa
     2281 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
