LOCUS       NM_025828               4315 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus lectin, mannose-binding 2 (Lman2), mRNA.
ACCESSION   NM_025828
VERSION     NM_025828.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4315)
  AUTHORS   Shirakabe,K., Hattori,S., Seiki,M., Koyasu,S. and Okada,Y.
  TITLE     VIP36 protein is a target of ectodomain shedding and regulates
            phagocytosis in macrophage Raw 264.7 cells
  JOURNAL   J Biol Chem 286 (50), 43154-43163 (2011)
   PUBMED   22016386
  REMARK    Erratum:[J Biol Chem. 2012 Jun 1;287(23):19340]
REFERENCE   2  (bases 1 to 4315)
  AUTHORS   Lau,N.C., Seto,A.G., Kim,J., Kuramochi-Miyagawa,S., Nakano,T.,
            Bartel,D.P. and Kingston,R.E.
  TITLE     Characterization of the piRNA complex from rat testes
  JOURNAL   Science 313 (5785), 363-367 (2006)
   PUBMED   16778019
REFERENCE   3  (bases 1 to 4315)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 4315)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CT009762.8 and
            AC160958.2.
            
            On Mar 21, 2007 this sequence version replaced NM_025828.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC055327.1, AK129028.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849380, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-396               CT009762.8         170007-170402
            397-515             CT009762.8         170551-170669
            516-633             AC160958.2         4695-4812
            634-713             AC160958.2         5968-6047
            714-875             AC160958.2         6217-6378
            876-990             AC160958.2         6488-6602
            991-1110            AC160958.2         9324-9443
            1111-4315           AC160958.2         10721-13925
FEATURES             Location/Qualifiers
     source          1..4315
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 29.8 cM"
     gene            1..4315
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /note="lectin, mannose-binding 2"
                     /db_xref="GeneID:66890"
                     /db_xref="MGI:MGI:1914140"
     exon            1..396
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            397..515
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            516..633
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            634..713
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            714..875
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            876..990
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            991..1110
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     exon            1111..4315
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2731..2736
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /note="hexamer: AATAAA"
     polyA_site      2753
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /note="major polyA site"
     regulatory      4291..4296
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /note="hexamer: AATAAA"
     polyA_site      4312
                     /gene="Lman2"
                     /gene_synonym="1110003H06Rik; 1300009F09Rik; GP36B; VIP36"
                     /note="major polyA site"
ORIGIN      
        1 ccaaagttat ggagccgcgc tctactggga taggaggctg gccagccaat aaggctgcca
       61 tcccgctggc ggcgaggctt tccttcttaa ctctcctgtg atcctagttt ggagggcttc
      121 cggccggaga ccattagaaa agacacccgg aaggcggaag tcttagggcg gaagtggccg
      181 agagaacaag gagaatggcg gccgaggcct ggctttggcg ctggggctgg ggctggggtc
      241 agcggtgccc agggaggcct gggcttcctg gccccggccc gagccccacg acatttctac
      301 atttgcttct gttgctgggg ccggtggctg cggatatcac cgacggcaac agcgaacacc
      361 tcaagcggga gcactcgctc atcaagccct accaaggggt cggttccagt tccatgccgc
      421 tctgggactt ccaaggcagc acgatgctga cgagccagta cgtgcgcctg accccggacg
      481 agcgcagcaa agagggctcg atctggaacc accagccatg cttccttaag gactgggaaa
      541 tgcacgtcca cttcaaagtc catggcacag ggaagaagaa cctccacgga gatggcattg
      601 ccttgtggta cacccgagac cgcctcgtac cagggcctgt gtttggaagc aaagacaact
      661 tccatggttt ggccatcttc ctggacacgt atcccaatga tgaaaccact gagcgtgtgt
      721 tcccgtacat ctcggtgatg gtgaacaatg gctctctgtc gtacgatcat agcaaagatg
      781 gacgatggag tgagttggca ggctgcacgg ctgacttccg caaccgggac catgacacct
      841 tcctagctgt acgctattcc cggggccgcc tcacggtgat gactgacctg gaagacaaga
      901 acgagtggaa gaactgcatt gacatcacag gggtgcgcct gcccactggc tactactttg
      961 gagcctctgc tggcaccggc gacctgtctg acaaccacga catcatctcc atcaagctgt
     1021 tccagctcac ggtggagcgg acgcctgagg aggagagcat cgactggacc aagattgagc
     1081 ctggcgtcaa tttcctcaag tcccccaaag acaatgtgga cgaccccact ggaaacttcc
     1141 gcaatgggcc cctgacagga tggagggtgt tcctgctgct gctgtgcgca ctcctgggcg
     1201 ttgtcgtctg tgctgtggtg ggcgctgtgg tgtttcagaa gcgccaggaa cggaacaaac
     1261 gtttctactg aggccggtct ggctgggaag ggcctgacct tgggccaggg ctcttatgtg
     1321 aacttttttc tactgggatt gtaaaaacca acgaacctta tttcttaact gtttcaaaga
     1381 aataattaaa gtattttcat acattttgct tcttgcccag ctgagacagc gggcagggct
     1441 ggggtcaggg tttagcatcc ccacagctgg aggtttttgc tccatcccaa ggctagctct
     1501 caggagcaag caagtctgta tttggggccc aggtgaggcc ctgtgtatgg gatggctact
     1561 tagggttcca ggcagtggtt ttgttctgag gcctgcggca gcaaatggga tttgtggttc
     1621 tggacctccc agtagctttt tacaaagaca gacctcagcc aaggctggag gaccgttcag
     1681 tagggccaag gtgtgacagt ttactaaaag tagcccgtct cagcctcatg cctgtcctaa
     1741 gggctttttt ccacatctgg tgattcccgg tcccttctct gacctagagc agagagatgg
     1801 tggctgtcac attgccattt ggggaagcat gactctcagg tcaagcagga ctcaccccat
     1861 tctgcctggt atgcaatgtt ttgggaatag ggtattgtac acaggatgtg acctcagccc
     1921 agggcacagg cactggggac agaggggcaa tgacagaaat cttgagattg aggtgatctg
     1981 gaaggagctg ctgagccagg aatggaagac agctggatgg cagtgctgct ccctttgggc
     2041 ggcttgaggg gacaaggctg gggggccgag tggaaagcag gcaataccac agccagcttc
     2101 cggtctctgg caccctcccc agtccagctc tagggactca ccaagtctgc ctccttcctc
     2161 gccatcccct ccccacagtc aatgcttggt ctcttacctc acaagcaaag gctgccatcc
     2221 atgcagtgcg gcgtcctcag ttcgctttgt tgctgcagga aaggagtggt ggaagcccat
     2281 ggagtgaaca cggctgtttt gttagtacca ccgtctttac cttctctcag cagagctgtt
     2341 cgctgagctg ctaggagcca tctgtccttg tcggaaactg ttcatggtca tgtgtccaga
     2401 ggtagtcaca gcagctgcca gctgcagctt gctcccaggc ttatgagcct gtcatggagc
     2461 ctcaggaacc ccgtcttttt gacacattgc tctctaagca tgcattgcct atttgctgtg
     2521 acaccatgtg ggccgtgtcc aagcagttac gttctgcgtg acagcaggcc tgggacctga
     2581 agcatcaggc ttctgccgtc gggaaggacc tcagttccta ttctaacttg gccttcctga
     2641 tgtccagagt tattagctac attataatca agatttacct ttgtgtatta gagcctcctt
     2701 agcagctgct gtagcattgg gagataactc aataaaacac ttgtctgaca gtactggcgg
     2761 ctgatggtct ctggggctca ctagtctagt tggggacttc catgccaaag gaggcacatg
     2821 gcattcccaa agatcacacc caaagctgtc ctctggtctc cacacacatg gcataaaaca
     2881 aaacaaaaca aacccctgct ttctccatat ttggcctagt aaatcttgtg gtgtaggacc
     2941 aggcagggtc tgcaatgaac cttagatgcc agcacttagt gagtttgttt aaccttccag
     3001 gtgggctctc catccctcat cacatagcct cactgtactt gtgaagaact gtttctaagt
     3061 tcaccccaga gttgtctgtc tgcacacagg aatgattcca caattagttt ttttgtcata
     3121 tgttcctaaa aatggccttc ctaatcaaca ctgaagcaca aatgtgtacc cctccttgta
     3181 tcttctctgc agtgttggag atgcaaacct gccgactcac gtggcctcct ttgtcccctc
     3241 cccacagaga tgatggttgt taaagtgttc cttaaattgt gtattttaaa actttgtttt
     3301 gctttaaaaa gcttttaaat ggtgtttgga tgtattcctc agctcttcga gcagcatggc
     3361 cgtgtcctgg acatgtaacc caagatgtcg ctcaagatgt cttctgtgca cactggtgac
     3421 cgctcttagc accgtaccag actgtcagat ggcctctggc ggtgcttata cctggtgcag
     3481 cctccaatgt tcttgaattg tgttctcaca cgtcatgaga agtttgggtc tgcagcttgt
     3541 atccagttcc agttttgcta gccagagcta cgatgcattc tgaagagaat ttttctcccc
     3601 ttcccacccc cactccctca gcagctctgc tgtgtgcttt tctgcaccag gctggcagtc
     3661 tctgctcacc ggtcacgtgc gtcctctgac gctttagttc caactcctgt tactgatgtt
     3721 gtggaattgt tattttcagc ctcctggtta taagctttgc agaggttcct tcccacatgc
     3781 ttagcttcct gatttgctaa tgacgtcatt tgatgtgcca tctgcattta aatggcactt
     3841 attaatcttt tccaaagatg attttcctga aggtttctaa ctttggcctt taaaaatttg
     3901 cactttgttg aggtgggtct tatggagtgc tgatgtcatc gcccctgctg tctccaccca
     3961 gttgtggcca agttttcctg actctgtcat cttccagcac ccactcctga ccttgtccct
     4021 ttctcttctc atcagctggg atgcttctcc tcccagctgc ttccatgtgg acctgtggct
     4081 caggagaccc agaggacatg aggtgcggaa ggtcttccct tcctgcctgg aatatggtag
     4141 gaccctgggg gtacagaagc aagcgcctgt gacagggctg gagagagcac atacctgtta
     4201 gatagggggc ctccaggtca gcactgaagc cctgcctcaa gccttagatt gtcaactgct
     4261 ggggttttgt gtgtgtgagt gtgtgaaaga aataaatccc tatttgttca gacta
//
