LOCUS       NM_199023                716 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus LKAAEAR motif containing 1 (IKAAEAR murine motif)
            (Lkaaear1), transcript variant 2, mRNA.
ACCESSION   NM_199023 XM_203919
VERSION     NM_199023.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Magdaleno,S., Jensen,P., Brumwell,C.L., Seal,A., Lehman,K.,
            Asbury,A., Cheung,T., Cornelius,T., Batten,D.M., Eden,C.,
            Norland,S.M., Rice,D.S., Dosooye,N., Shakya,S., Mehta,P. and
            Curran,T.
  TITLE     BGEM: an in situ hybridization database of gene expression in the
            embryonic and adult mouse nervous system
  JOURNAL   PLoS Biol 4 (4), e86 (2006)
   PUBMED   16602821
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK076877.1 and BC087873.1.
            
            On Dec 29, 2009 this sequence version replaced NM_199023.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK076877.1, BU937645.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-12                AK076877.1         2-13
            13-715              BC087873.1         1-703
            716-716             AK076877.1         717-717
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 103.73 cM"
     gene            1..716
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /note="LKAAEAR motif containing 1 (IKAAEAR murine motif)"
                     /db_xref="GeneID:277496"
                     /db_xref="MGI:MGI:2685538"
     exon            1..36
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /inference="alignment:Splign:2.1.0"
     exon            37..458
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..641
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /note="isoform 2 is encoded by transcript variant 2;
                     LKAAEAR motif-containing protein 1; protein LKAAEAR1"
                     /codon_start=1
                     /product="protein LKAAEAR1 isoform 2"
                     /protein_id="NP_950188.2"
                     /db_xref="CCDS:CCDS17221.1"
                     /db_xref="GeneID:277496"
                     /db_xref="MGI:MGI:2685538"
                     /translation="MPTLGVKGARERDKNSASGAGAGAGAGAGAGEKHRKGPRTTDPP
                     KTGWALTKQRLVALSPTLRQRHLLFGDFLDDIGKVASMFPRESVELPYDMPDPRTWSQ
                     ALNLPSEHQNRFLGLIKAAEARGRVHTLRLRYTRMRAEEISLLIQKQSSARAAIRLEL
                     FLPPQLKPTKIPDPLDRHERRRVETILEEEVDGNIFPR"
     exon            459..581
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /inference="alignment:Splign:2.1.0"
     exon            582..716
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /inference="alignment:Splign:2.1.0"
     regulatory      696..701
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /note="hexamer: TATAAA"
     polyA_site      716
                     /gene="Lkaaear1"
                     /gene_synonym="4930526D03Rik; Gm692"
                     /note="major polyA site"
ORIGIN      
        1 actaaggcca aagacttccc accgaaacgg cagaaaaccg gagcatgccg accctgggag
       61 taaagggtgc acgggagcgg gacaaaaaca gtgcatctgg agctggagct ggagctggag
      121 ctggagctgg agctggagag aagcacagga agggcccgag gactacagac cctccgaaga
      181 caggctgggc attgactaag cagaggctgg tagccttgtc ccctacacta cgccaacgcc
      241 acctgctctt tggcgacttt cttgacgaca taggcaaggt ggcctccatg tttccacgcg
      301 agtcggtgga gttaccctac gacatgcctg acccgcgcac ctggtcacag gcattaaatc
      361 taccatctga gcatcaaaat cggtttctgg gccttattaa ggccgcggaa gcccggggcc
      421 gagtccatac cctgcggttg cgctacaccc gaatgcgggc agaggaaatc tctttgctga
      481 tccagaagca gagctccgcg cgcgctgcca tccgactgga actgttccta ccaccccaac
      541 tgaagcccac aaagatccct gatcctctgg accgacacga gcggaggcgt gttgagacaa
      601 tcctggaaga ggaggtagat ggcaacatct tcccccgatg actgagacct tggcgttcag
      661 agaccctacg gttacagcag ctccccaccc tctcatataa agttctcttc caaggg
//
