LOCUS       NM_001324517             527 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus LITAF domain containing (Litafd), mRNA.
ACCESSION   NM_001324517 XM_006543274 XR_875880
VERSION     NM_001324517.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC115005.11.
            
            On Jul 6, 2021 this sequence version replaced NM_001324517.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC100524.1, SRR5189685.114234.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-132               AC115005.11        52122-52253         c
            133-234             AC115005.11        50039-50140         c
            235-379             AC115005.11        49617-49761         c
            380-527             AC115005.11        49115-49262         c
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="16"
                     /map="16 4.27 cM"
     gene            1..527
                     /gene="Litafd"
                     /gene_synonym="EG436336; Gm43786; Gm5767"
                     /note="LITAF domain containing"
                     /db_xref="GeneID:436336"
                     /db_xref="MGI:MGI:3643507"
     exon            1..132
                     /gene="Litafd"
                     /gene_synonym="EG436336; Gm43786; Gm5767"
                     /inference="alignment:Splign:2.1.0"
     exon            133..234
                     /gene="Litafd"
                     /gene_synonym="EG436336; Gm43786; Gm5767"
                     /inference="alignment:Splign:2.1.0"
     exon            235..379
                     /gene="Litafd"
                     /gene_synonym="EG436336; Gm43786; Gm5767"
                     /inference="alignment:Splign:2.1.0"
     CDS             258..494
                     /gene="Litafd"
                     /gene_synonym="EG436336; Gm43786; Gm5767"
                     /codon_start=1
                     /product="lITAF domain-containing protein"
                     /protein_id="NP_001311446.2"
                     /db_xref="GeneID:436336"
                     /db_xref="MGI:MGI:3643507"
                     /translation="MPTSIPVQAVCPYCGNRIMTVTTYTPGLLTWLLCSGLFVFGCFL
                     GCCLIPFCIRSTMDVTHSCPMCHHQIYYFHRLGL"
     exon            380..527
                     /gene="Litafd"
                     /gene_synonym="EG436336; Gm43786; Gm5767"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcggggcct ctccaaggaa acttctggaa ccaggggccc gtccactcag aacctggaac
       61 cccctgagtc tgctcaatga gtacttctga aacaaaggac tctcatggca ccaagagaga
      121 accctgacca tgatgttagg cagtccaggg agacgccacc ttcttcctac cctcctagct
      181 caagaggacc aggatcacct ggagtttacc ctgtgtacaa ccaagtccca ccaggcccgt
      241 tcactggcat accttatatg ccaacttcga tcccagtgca ggccgtatgt ccctactgtg
      301 ggaaccgtat catgacagtg accacctata ccccaggcct cctcacctgg ctgctgtgca
      361 gtggcctctt tgtgtttggg tgcttcctgg gctgctgtct catccccttc tgcatacgga
      421 gcaccatgga tgtgacccac tcctgcccca tgtgccatca ccagatctac tacttccatc
      481 gcctgggatt atgactataa acagcaataa agcaacatca gggtgta
//
