LOCUS       NM_172397               3007 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus LIM domain containing 2 (Limd2), transcript variant 2,
            mRNA.
ACCESSION   NM_172397
VERSION     NM_172397.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Shalom-Barak,T., Zhang,X., Chu,T., Timothy Schaiff,W., Reddy,J.K.,
            Xu,J., Sadovsky,Y. and Barak,Y.
  TITLE     Placental PPARgamma regulates spatiotemporally diverse genes and a
            unique metabolic network
  JOURNAL   Dev Biol 372 (1), 143-155 (2012)
   PUBMED   22967998
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Phillips,R.L., Ernst,R.E., Brunk,B., Ivanova,N., Mahan,M.A.,
            Deanehan,J.K., Moore,K.A., Overton,G.C. and Lemischka,I.R.
  TITLE     The genetic program of hematopoietic stem cells
  JOURNAL   Science 288 (5471), 1635-1640 (2000)
   PUBMED   10834841
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL596331.15, BC068130.1 and CF738656.1.
            
            On Oct 5, 2017 this sequence version replaced NM_172397.3.
            
            Transcript Variant: This variant (2) differs in the 5' UTR,
            compared to variant 1. Variants 1, 2 and 3 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC068130.1, AK032430.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                AL596331.15        168527-168616       c
            91-2976             BC068130.1         1-2886
            2977-3007           CF738656.1         193-223
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="11"
                     /map="11 68.89 cM"
     gene            1..3007
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /note="LIM domain containing 2"
                     /db_xref="GeneID:67803"
                     /db_xref="MGI:MGI:1915053"
     exon            1..126
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            127..221
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            222..266
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            267..406
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            407..2986
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      1199
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /note="major polyA site"
     regulatory      1504..1509
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1526
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
     regulatory      2953..2958
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2976
                     /gene="Limd2"
                     /gene_synonym="0610025L06Rik"
ORIGIN      
        1 gccgcggtga ggcggcggct gccgctcggg gaccactggc agcggcggca gctcgcgccc
       61 gcgccacttg cacccgaggc ggtcccgcag cgaccgaccc ccgccccgcg gcgcaggccg
      121 ggcccgaacc ctcttggctc ggcatctcct ccagggccac caagcacctc tgaagagcca
      181 tgttccaagc tgccggagcc gcccaggcca ccccctctca tgaagccaaa ggcagcagtg
      241 gcagcagcac ggtacagcgg tctaagtcct ttagcttgcg ggctcaggtg aaggagacct
      301 gtgcagcctg ccagaagact gtgtacccga tggagcggct ggtggcagac aagctcattt
      361 tccacaactc ttgtttctgt tgcaaacact gccacaccaa actcagcctg ggcagttatg
      421 ctgcaatgca cggtgaattt tactgcagac ctcactttca gcagctgttt aagagtaaag
      481 gcaactacga tgaagggttt ggtcgtaaac agcacaagga gctctgggcc cacaaggagg
      541 tggactcagg caccaagacg gcctgagacc cctttaacac ccattccctc ccagcacatg
      601 gcctcccgct gggcagtgga aaggagatta acccgggggc gcggggtggg agaggatgag
      661 gctccctcac acaggtttca ggcataaggc tctgctccag gattccttac ttttcccatg
      721 ggaggttggc gttgggaacc agaattggaa ttttcaccat actgtgtcct ttagtccacc
      781 tcatctcacc ccacggctcc ctgggaggcc cacaagccca gcttccctac ttaggtgcct
      841 tttctccagc aaggagtcag catgccctcc tcagggtccc aagctccctc actgccacct
      901 gggccttgtg tacccccttg tctccccatc tacctctgcc ccttagcctg gtaatgagcc
      961 acagagactg gaagagggag agtgccatct actgggcctc atagatgcca cctcgctgag
     1021 gggggagggc tggggaagag gcaagacagc ctgcagcctt cagggtctgg gggtcccttg
     1081 caccacaaag ctaaagctct tgctagagcc tcagctgaca gggtcggcag tagctatgct
     1141 cctccatctg ttgtgctgtt ctgttgtgat caaccctctt ttaaaaacat ttaaacagct
     1201 cttgactctc ttgtgtggcc tgatggggat gctttgtggc aggcatgcag cagactcctc
     1261 atagcgaggg gaatggagga cagcccacaa tactcctggc cttaaagggg ctggtggtct
     1321 gtgccacctt ggggtgttaa gctgtcaaac ctgaaatccc actgtgtatc ctcgtcccag
     1381 agtagccagg cacactggct tgcaaccaca caaatgtttt gggtttttga gacagggtct
     1441 cactgtagct ctgattggcc tagaacacag agatctgcct gcctctgctt ccaaagtgct
     1501 gggattaaaa aggcctgtgt catccatgcc tggcttcggt tcttcagagg ttaattcact
     1561 acacttgagt acagaagaga acctttctga cttggccaag accttagtgt ctgcctttct
     1621 gctagctgat tccagctgtc caatttcctc ctagtccttt accctagaaa tctgcaaaga
     1681 atggtaggaa tccatagcct atcaagtgct gccagtacaa cgtcttccac cttctctcct
     1741 catgactgtc atcttcctgg agcctcttgt atgaagtggg atgtcacagc tactgtgcca
     1801 ggacctccag gggcaaactt tgcgctcctc agagttcatg cacactgagg gacgacatca
     1861 cacagcagaa gcacaaggca agtgtgaaga tgctccctca gtggaagtct gagttgtctc
     1921 gccccaagcc ctattttcct ggcttctgca aactgcctat gggacagatg aatcggtaag
     1981 caagaggtca aaggctgcta ggcagcccgg cctctggtct tgctaatggg tgaatcactg
     2041 tagacttcct tcaggtgggc atctgggaag caggcacgac aaagccttgg atttatggga
     2101 caaggatggt ctcttgctgc agtaaagaaa cagtggctgg gctggacgtg gcagcacatg
     2161 cttttaatac cagcactcag gaggcagagg caggtgggtc tctgtgcatt caagatcagc
     2221 ctgttctatg tagtgagttc caggacagca gagctacata gtgagacctt gcctctgact
     2281 gatgttctgt aagggaccaa gggaaacccc tcggccagga agactacaaa atgccatgaa
     2341 tggtcctagg aactcagcta ttgatggatt cggctcagat ggacaaccag tgctgtccca
     2401 gtgacgcgct gggataaaag ggaaggagag gggccacctt ggccaagtta tcacaggctg
     2461 cttttggcag ccatttcaag ttctatttaa gaggcctcaa cttgggtgtt aggcattgta
     2521 cccaacccat ccctgtaaaa attcccacca ccacctttaa ccgaaagcat ggtcacagga
     2581 cccttctgat ataaatgatc ccttttattg taagtaatgc actggcctgg ctttgcactg
     2641 caagccctca gtcaagatat agtcaataac tatggctgca ggttcttctg cacattccac
     2701 aattcagaca cagagctggg caagtgggag ggaggggaag gagggtggca gcgtgcacct
     2761 gacccaggct tggcccttcc atgtggggtt ggtgaaggca gataaacccc atggaatgaa
     2821 gaacaaatga aggtggtgta gcatctttgc acagcaggcc aagggctgct aggaaacctt
     2881 ccttcataac ctttgggccc aggccaccct ggaggcccac aacttgtcat ttggatttgt
     2941 taataagaaa aaaataaatt aacagcttgg tcctgaggct gctgaaaaaa aaaaaaaaaa
     3001 aaaaaaa
//
