LOCUS       NM_011090               2424 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus leukocyte immunoglobulin-like receptor, subfamily A
            (with TM domain), member 6 (Lilra6), transcript variant 1, mRNA.
ACCESSION   NM_011090
VERSION     NM_011090.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Liu X, Jiao Y, Cao Y, Deng N, Ma Y, Hasty KA, Kang A, Chen H,
            Stuart JM and Gu W.
  TITLE     Decreased expression levels of Ifi genes is associated to the
            increased resistance to spontaneous arthritis disease in mice
            deficiency of IL-1RA
  JOURNAL   BMC Immunol 17 (1), 25 (2016)
   PUBMED   27480124
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Kelsey L, Flenniken AM, Qu D, Funnell AP, Pearson R, Zhou YQ,
            Voronina I, Berberovic Z, Wood G, Newbigging S, Weiss ES, Wong M,
            Quach I, Yeh SY, Deshwar AR, Scott IC, McKerlie C, Henkelman M,
            Backx P, Simpson J, Osborne L, Rossant J, Crossley M, Bruneau B and
            Adamson SL.
  TITLE     ENU-induced mutation in the DNA-binding domain of KLF3 reveals
            important roles for KLF3 in cardiovascular development and function
            in mice
  JOURNAL   PLoS Genet 9 (7), e1003612 (2013)
   PUBMED   23874215
REFERENCE   3  (bases 1 to 2424)
  AUTHORS   Kubagawa H, Burrows PD and Cooper MD.
  TITLE     A novel pair of immunoglobulin-like receptors expressed by B cells
            and myeloid cells
  JOURNAL   Proc Natl Acad Sci U S A 94 (10), 5261-5266 (1997)
   PUBMED   9144225
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB665966.1, BC127613.1 and AK152898.1.
            
            On Jul 23, 2009 this sequence version replaced NM_011090.1.
            
            Transcript Variant: This variant (1) encodes a functional protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U96684.1, BC127613.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-16                BB665966.1         1-16
            17-2090             BC127613.1         1-2074
            2091-2424           AK152898.1         1949-2282
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="7"
                     /map="7 2.25 cM"
     gene            1..2424
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /note="leukocyte immunoglobulin-like receptor, subfamily A
                     (with TM domain), member 6"
                     /db_xref="GeneID:18726"
                     /db_xref="MGI:MGI:1195969"
     exon            1..60
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     CDS             27..2018
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /note="paired-Ig-like receptor A3"
                     /codon_start=1
                     /product="paired-Ig-like receptor A3 precursor"
                     /protein_id="NP_035220.2"
                     /db_xref="CCDS:CCDS20728.1"
                     /db_xref="GeneID:18726"
                     /db_xref="MGI:MGI:1195969"
                     /translation="MSCTFTALLCLGLTLRLWIPVLTGSLPKPILRVQPDSVVQVWTK
                     VTFLCEETIGANEYRLYKDGKLYKTVTKNKQKPANKAEFSFSNVHLRNAGQYRCSYNT
                     QDESSGYSDPLVLVVTGHYWTPSLSAQASPVVTSGGYVTLQCESSQSYHRFILTVEGQ
                     QKVSWTQDSQYNISTGKYHALFSVGPVTPNQRWICRCYSYDRNRPYVWSPPSESVELL
                     VSGNLQKTTIKAEPGSVIASKRAMTIWCQGNLDAEVYFLHNERSQKTQSTQTLQEPGN
                     KGKFFIPSVRRQHAGQYRCYCYSSAGWSQPSDTLELVVTGIYEHYEPRLSALPSPVVT
                     AGGKMTLHCASHGHYDKFILTKEDKKFTSSQDTEHISSSRQYRALFIIGPTTPTHTGA
                     FRCYGYYKNTPLLWSVPSALQQILISGLSKKPSLLTHQGHILDPGMTLTLQCYSDINY
                     DRFALHKVGGADIMQHSSQQTDTGFSVANFTLGYVSSYTGGQYRCYGAHNLSSEWSAS
                     SDPLDILISGQLPLTPSLSVQPNHTVHSGETVSLLCWSMDSVDTFILSKEGSAQQPLR
                     LKSKSHDQQSQAEFSMSAVTSHLSGTYRCYGAQDSSFYLLSSASAPVELTVSATENQD
                     HTTENLIRMGMAVVVLIVLSILATEAWQSHRQTHPAAGN"
     exon            61..96
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            97..381
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            382..687
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            688..972
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            973..1281
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            1282..1578
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            1579..1881
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2424
                     /gene="Lilra6"
                     /gene_synonym="7M1; Pira3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgcagcc actgagggga gatgccatgt cctgcacctt cacagccctg ctctgtcttg
       61 gactgactct gaggctctgg atcccagtgc tgacagggtc cctccctaag cctatcctca
      121 gagtacagcc agactctgtg gtccaagtgt ggactaaggt gaccttcttg tgtgaagaga
      181 caattggagc caatgagtac cgcctctata aagatggaaa gctatataaa accgtaacaa
      241 agaacaaaca gaagccagca aacaaggctg aattctcatt ctcaaatgta cacctgagaa
      301 atgcaggtca atatcgatgt tcctacaaca cccaggatga atcatcaggc tacagtgacc
      361 ccctggtgct agtagtgaca ggacactact ggacacccag cctttcagcc caggccagcc
      421 ctgtggtaac ttcaggaggg tatgtcactc tccagtgtga gtcttcgcag agctatcaca
      481 ggttcatttt aactgtagaa ggacagcaga aggtctcatg gacacaagac tcacagtata
      541 acatctctac agggaagtac cacgccctgt tctctgtggg ccctgtgacc cccaaccaga
      601 gatggatatg cagatgctac agttatgaca ggaacagacc atatgtgtgg tcacctccaa
      661 gtgaatccgt ggagctcctg gtctcaggta atctccaaaa aaccaccatc aaagctgaac
      721 caggctctgt gatcgcctcc aagagagcaa tgaccatctg gtgtcagggg aacctggatg
      781 cagaagtata ttttctgcat aatgagagaa gccaaaaaac acagagcaca cagaccctac
      841 aggagcctgg gaacaagggc aagttcttca tcccttctgt gagacgacaa catgcagggc
      901 aatatcgctg ttattgttac agctcagctg gttggtcaca gcccagtgac accctggagc
      961 tggtggtgac aggaatctat gaacactatg aacccaggct ctcagcactg cccagccctg
     1021 tggtgacagc aggagggaag atgacactcc actgtgcctc acatggtcac tatgataaat
     1081 tcattctcac caaggaagat aagaaattca ccagctcaca ggacacagag catatatctt
     1141 ctagtagaca gtacagagcc ctgtttatta taggacccac aaccccaacc catacagggg
     1201 cattcagatg ttatggttac tacaagaata ccccattact gtggtcagta cctagtgctc
     1261 tccaacaaat actcatctca gggctgtcca agaagccctc tctgctgact caccaaggcc
     1321 atatcctgga ccctggaatg accctcaccc tgcagtgtta ctctgacatc aactatgaca
     1381 gatttgctct gcacaaggtg gggggagctg acatcatgca gcactctagc cagcagactg
     1441 acactggctt ctctgtggcc aacttcacac ttggctatgt gagtagctac actggaggcc
     1501 aatacagatg ctatggtgca cacaacctct cctctgagtg gtcagcctcc agtgaccccc
     1561 tggacatcct gatctcagga cagctccctc tcactccttc cctctcagtg cagcctaacc
     1621 acacagtgca ctcaggagag accgtgagcc tgctgtgttg gtcaatggac tctgtggata
     1681 ctttcattct gtccaaggag ggatcagccc agcaacccct gcgactaaaa tcaaagtccc
     1741 atgatcagca gtcccaggca gaattctcca tgagtgctgt gacctcccat ctctcaggca
     1801 cctacaggtg ctatggtgct caagactcat ctttctacct cttgtcatct gccagtgccc
     1861 ctgtggagct cacagtctca gccacagaga accaggatca cacaacggag aatctgatca
     1921 ggatggggat ggcagtcgtg gtcctcatcg tcctttcgat tctagccact gaggcttggc
     1981 aaagccatag acagacccac cctgcagctg gaaactaatc taaagagaaa agaatgcatg
     2041 tttctatgtt ctacactctg ggaaatatat ctgatgaccc aaagttgtca aaaaaaaaac
     2101 aaaaaacgaa aaaaaaaaaa acaaaacact gttgtggtat tgaggaactg ttgggataga
     2161 atgtctaggg agcaaaagtg tggggttcag agggaagtgg aattttataa tgaggtgctt
     2221 cctcaacaaa tgaattcctg tccctccaca tactgggagc ctttgtttcc tgaacactct
     2281 tctgaaccca gaaagtgagg gaataggctg tcccacctgc ctggaatatc tttcacctat
     2341 ggattgtaat tttctgtatt tctttatggg atgtattcat tcacatttaa aggcctctgt
     2401 catctttata aattgtattt aagg
//
