LOCUS       XM_011239031            2039 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus LIM homeobox protein 3 (Lhx3), transcript
            variant X1, mRNA.
ACCESSION   XM_011239031
VERSION     XM_011239031.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000068.8) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 22, 2016 this sequence version replaced XM_011239031.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2039
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="2"
     gene            1..2039
                     /gene="Lhx3"
                     /gene_synonym="Lim3; mLim-3; mLIM3; P-LIM"
                     /note="LIM homeobox protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 32
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:16871"
                     /db_xref="MGI:MGI:102673"
     CDS             364..1158
                     /gene="Lhx3"
                     /gene_synonym="Lim3; mLim-3; mLIM3; P-LIM"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx3 isoform X1"
                     /protein_id="XP_011237333.1"
                     /db_xref="GeneID:16871"
                     /db_xref="MGI:MGI:102673"
                     /translation="MEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLETLKSAYN
                     TSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSR
                     GSSKSDKDSIQEGQDSDAEVSFTDEPSMADMGPANGLYSSLGEPAPALGRPVGGLGSF
                     TLDHGGLTGPEQYRELRPGSPYGIPPSPAAPQSLPGPQPLLSSLVYPDTNLSLVPSGP
                     PGGPPPMRVLAGNGPSSDLSTESSSGYPDFPASPASWLDEVDHAQF"
ORIGIN      
        1 gccacgtccc tctggctgag cgctgcttca gccgcgggga gagcgtctac tgcaaagacg
       61 acttctttaa gtactgtggc tctgcggagg ctgcaggaca gacggggctg atggagtctt
      121 cctgaccgca cctcgggcgc tgggagctgg ctgctttgag acccgctcca ggcgaaggag
      181 cccctccgct gagccgcacc ctgtgcatcc tgcaggcgct tcgggaccaa gtgcgccgca
      241 tgccagctgg gcatcccgcc cacgcaggtg gtgcgccgcg cccaggactt cgtgtaccac
      301 ctgcattgct tcgcctgcgt ggtctgcaag cggcagctgg ccacgggcga cgagttctac
      361 ctcatggaag acagccggct ggtgtgcaag gcggactacg aaacagccaa gcagcgagaa
      421 gccgaggcca cagccaagcg gccgcgcacc accatcaccg ccaagcagct ggagacgctg
      481 aagagcgcct acaacacttc gcccaagccg gcgcgccacg tgcgcgagca gctctcctcc
      541 gagaccggcc tggacatgcg agtggtgcag gtgtggttcc agaatcgccg ggctaaggaa
      601 aagagactga agaaagacgc tggccggcag cgctggggac agtatttccg caatatgaag
      661 cgctcccgcg gcagttccaa gtccgacaag gacagcatcc aggagggaca agacagcgac
      721 gccgaagtct ccttcactga tgagccgtcc atggctgaca tggggcctgc taatggcctg
      781 tacagcagcc tgggagagcc tgcccctgcg ttgggccggc ccgtaggagg cctgggcagc
      841 tttaccctgg atcacggagg cttgacgggt ccagagcagt accgagagct acgcccaggc
      901 agcccctatg gcatcccccc atctcctgca gccccccaga gccttcctgg cccccagcct
      961 ctcctctcca gcctggtata cccagacacc aacttgagcc ttgtcccttc agggccccca
     1021 ggtggacccc cacccatgag ggtgctggct ggaaatgggc ccagctccga cctgtccaca
     1081 gagagcagtt ctggctaccc agactttcct gctagccctg cttcctggct ggatgaagta
     1141 gaccatgctc agttctgacc gaggcctctg cttcccctgg ctctaactca ggggtcttgg
     1201 tgctgcctct gggtggatgg ctagccccat cccatgctgt ccattccaag gacctctgag
     1261 ggaaggacag ggttcccaag tgagagaata gggactgtcc cacttccagg ctctctggca
     1321 gctccctggg gctgagggac tccaaagtcc ttccttggac acaagggtgg cctgcctggt
     1381 ggctgtccac aagccagtga ccatttcttg taagcatttc tctttcttta ctggccagtt
     1441 aacccttgct gctatttccg acagggcagg aggctaggcc tacctaatgt cctggcagaa
     1501 aacaacagta acgccttgct tcatcgcttc tgatggggct tggtaggaga ctgtgcttgt
     1561 gtccttcctg gccactgaca aaacctggga gcacacctct cctccttact gctgccagct
     1621 ctccctcccc ggagtctcca gatcattctg ttctggaatg ccgtgtgttg ggggagtaga
     1681 gctttctgga gccccttctc caaggcgtag cctctaaatg cgagaacaat tccccttcgg
     1741 aggcacagcc tccctcgggt gcaaagcaga attgtgcacc gtgaacagac acctttgcca
     1801 aacagactgt ggtcccgagc agggtcgggg ggtggttcca ctggaggagg ctgggctggg
     1861 ggtcctccca acccaatctg tctcagacac aaagcttgac cacgtgaaag ttaagatcat
     1921 tcctgaaaac aggatcttgg ctacctgttg gttctgtaaa caccctgtaa cttttattta
     1981 ttccctggtg atccgctctt tccaagactt caataaattt gtcagtttca gtgctagaa
//
