LOCUS       NM_001311102            1149 bp    mRNA    linear   ROD 03-JUN-2024
DEFINITION  Mus musculus LEM domain containing 1 (Lemd1), transcript variant 1,
            mRNA.
ACCESSION   NM_001311102 XM_006529346
VERSION     NM_001311102.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Lin,Q., Donahue,S.L., Moore-Jarrett,T., Cao,S., Osipovich,A.B. and
            Ruley,H.E.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC124108.15, AK144269.1, AC160545.8, AK016010.1 and CO040031.1.
            
            On Jul 24, 2015 this sequence version replaced XM_006529346.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU935906.1, AI595256.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-58                AC124108.15        4155-4212           c
            59-372              AK144269.1         62-375
            373-446             AC160545.8         54459-54532
            447-886             AK016010.1         443-882
            887-1149            CO040031.1         1-263               c
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="1"
                     /map="1 57.24 cM"
     gene            1..1149
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /note="LEM domain containing 1"
                     /db_xref="GeneID:213409"
                     /db_xref="MGI:MGI:1922403"
     exon            1..58
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            59..178
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /inference="alignment:Splign:2.1.0"
     CDS             97..708
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /note="isoform 1 is encoded by transcript variant 1; LEM
                     domain-containing protein 1"
                     /codon_start=1
                     /product="LEM domain-containing protein 1 isoform 1"
                     /protein_id="NP_001298031.1"
                     /db_xref="CCDS:CCDS78679.1"
                     /db_xref="GeneID:213409"
                     /db_xref="MGI:MGI:1922403"
                     /translation="MVDVKCLSDYELHKHLMKLGFTPGPILPSTRKTYEKKLVQLLAS
                     PPWKPPVMKRPTRPHGSEDSDDSEDPAIKIILKGNIKFSKNKGKEGKKRLEASTNKRR
                     ILDIYLSQKPTKKVRYAARPSPRIKRRCVSEEDYSRCNKRSKSSSPYQNPRNNFPCQN
                     PEDSFLWESSENNVPWSLKLAVLGIFFIVLFVYIIVEKKPLLG"
     exon            179..301
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            302..372
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            373..446
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /inference="alignment:Splign:2.1.0"
     exon            447..1132
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      919..924
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /note="hexamer: ATTAAA"
     regulatory      931..936
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /note="hexamer: AATACA"
     polyA_site      939
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /note="major polyA site"
     polyA_site      961
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
     regulatory      1099..1104
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
                     /note="hexamer: AATAAA"
     polyA_site      1121
                     /gene="Lemd1"
                     /gene_synonym="4930540I23Rik; 6430514M23Rik; LEMP-1"
ORIGIN      
        1 ctcacctagc taaagtaacc agactgattg catagacttc agacaaccat gtgaagggga
       61 ctccactgcc agagaagagg ccacgttttg atcaccatgg tggatgtgaa gtgtctgagt
      121 gactatgagt tgcacaagca tcttatgaag cttggattca cacctggccc aatactacct
      181 tccaccagaa agacctacga gaagaagctg gtgcagcttc tggcctcgcc tccctggaaa
      241 ccgcctgtca tgaagagacc cacaaggccg cacggctctg aggacagcga tgacagtgaa
      301 gatccagcca taaaaatcat tttgaaagga aatatcaaat tctcaaaaaa caaaggcaag
      361 gaaggcaaga agagacttga ggcttctact aataaaagaa gaatcttaga catctacctg
      421 agccagaagc ccacaaagaa agtcaggtat gctgcaagac caagtccaag gattaagcgg
      481 agatgtgtct ctgaagaaga ctactctcga tgcaacaaga gatccaagag cagctcccca
      541 taccagaacc ccaggaacaa ctttccatgc cagaaccctg aggacagctt tctgtgggag
      601 agctccgaga acaacgtccc atggagcttg aagctggccg tccttgggat tttcttcatt
      661 gtgttgtttg tctacataat tgtggaaaag aagccactct tgggttaaac ccttcaggag
      721 catagcggcg tctgctgtgt cccgaccttt aacaggaacc ttagagctgt gcagaaggtc
      781 catggctaca accaggcaac ttctccccgc cctatactgg cttctcctgg ctgtttctgg
      841 gttcagccgg gtggaggagc aagggcagaa ccaggcagca tggtggtgca tgatggtctg
      901 taagccaagg aagccatcat taaagatgct aatacatcag cacgctcttc tgtaagggaa
      961 actgcctgag cctcctaccc tctgccctcc ggtttcctcc tgtccgtttt cttccccagc
     1021 cgaaaaggct tcacattctt acgactgaga ctacttgcat actacagagc atagaaacaa
     1081 ggagaaaatt atgttcttaa taaaatatgt ctaagtgtcc aggtagtggt gaaaaaaaaa
     1141 aaaaaaaaa
//
