LOCUS       NM_001166659            2201 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus leucine, glutamate and lysine rich 1 (Lekr1),
            transcript variant 1, mRNA.
ACCESSION   NM_001166659
VERSION     NM_001166659.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Almstrup K, Nielsen JE, Hansen MA, Tanaka M, Skakkebaek NE and
            Leffers H.
  TITLE     Analysis of cell-type-specific gene expression during mouse
            spermatogenesis
  JOURNAL   Biol Reprod 70 (6), 1751-1761 (2004)
   PUBMED   14960480
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114650.10 and AC110245.10.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the full-length isoform (1). The exon
            combination of this variant is predicted based on orthologous
            transcript alignments.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence because no single transcript was available for the
            full length of the gene. The genomic coordinates used for the
            transcript record were based on orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMN01164139, SAMN01164141
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                AC114650.10        141050-141133
            85-173              AC114650.10        143912-144000
            174-388             AC114650.10        158714-158928
            389-508             AC110245.10        156637-156756       c
            509-684             AC110245.10        154811-154986       c
            685-870             AC110245.10        142200-142385       c
            871-952             AC110245.10        109001-109082       c
            953-1030            AC110245.10        100619-100696       c
            1031-1234           AC110245.10        98042-98245         c
            1235-1328           AC110245.10        79662-79755         c
            1329-1493           AC110245.10        65991-66155         c
            1494-1793           AC110245.10        61974-62273         c
            1794-2201           AC110245.10        50905-51312         c
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 30.24 cM"
     gene            1..2201
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /note="leucine, glutamate and lysine rich 1"
                     /db_xref="GeneID:624866"
                     /db_xref="MGI:MGI:3645902"
     exon            1..84
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            85..173
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     CDS             126..2198
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="protein LEKR1 isoform 1"
                     /protein_id="NP_001160131.1"
                     /db_xref="GeneID:624866"
                     /db_xref="MGI:MGI:3645902"
                     /translation="MDRHIPMHALPEEIQKMSPEETVCKYCGVSYLILHEFKAMEEKL
                     KAVQEEMKFYQGSVEREKKLQEKLQSLSQEFEQYKSDSESKKARVEDASIQLKKQQNG
                     FQRVQKELGHLQLELKIKQKQSQVFSQRLSEYKYFWNKTLLLLTFTKRELTSIKYEIY
                     DNFQNWTSLKGEVFLQIKSISDTALAEIDMLNKSLTVSQRNKVCLEEEMKSLKLLSDA
                     AILRSQQMEASKQHEVNLQARCYELQKEALDLQCQVEALGLRLQKTAKELDNCKEMLM
                     KKSNDAESCERELRKLKFESIISESRHKRLLKEKEDSLITCQQLYKTVQEELTTKERQ
                     EEDIKRRINLTENELEMTKSLLLQTQEEILTLKNERELMLVSHQKSIEQLQETLRQKL
                     LSDDSWREKIEAELSKERARHLIEFQDQALLFKEEAKLELDIEKEKHQEIIRKYQQEH
                     EDLQRKIGDLIADATKDLRLEVASLQEKLHESHAQYTEESESKKKEIEDLKNLVAEFQ
                     CRLKQETGRDDSISEELKKEMKQKSDELERVRLAQTQLLQQFSQSQEENTFLQETVRR
                     ECEERFELTEALSQAKEQLLELRRSGGNLPCSLNKGTLTYPASAVSNHRELSSGRQNC
                     GRGTGTPSLRGLPKPTASPTPDKLKKVSSSGLPALSQAYPPRGRAISVNEARQRLTAI
                     LRRRLSQQ"
     exon            174..388
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            389..508
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            509..684
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            685..870
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            871..952
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1030
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1234
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1328
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            1329..1493
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..1793
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
     exon            1794..2201
                     /gene="Lekr1"
                     /gene_synonym="EG546798; EG624866; Gm6534"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgccttgac gtcaggccaa cgtgcagcgc ggtcgcccgg gagaccaggg aagccgtttt
       61 acaccctgcg gagtcccggg ctaggctgtt tttctgcagt gctctctcag tacgtttggg
      121 gaactatgga tcgtcacatt cccatgcatg ccttacctga agaaatccaa aagatgtctc
      181 ctgaagaaac agtttgtaaa tactgtggcg tcagctatct aattcttcat gaatttaagg
      241 ctatggaaga aaaactgaaa gcagtgcaag aagaaatgaa attttatcaa ggaagtgtag
      301 aacgtgaaaa gaaacttcaa gaaaagctgc agtctcttag ccaggagttt gaacagtata
      361 aaagtgacag cgagtccaag aaggcaagag ttgaagatgc aagcatacag ttaaaaaagc
      421 aacaaaatgg atttcagaga gtacagaaag aattaggtca tctacaactt gagttaaaaa
      481 ttaaacaaaa acaatcccaa gtcttcagtc aaagattgtc agaatacaaa tacttctgga
      541 ataagactct tttattactt acttttacta aaagggaact aacaagtatt aaatatgaaa
      601 tatatgataa ttttcaaaac tggacttcac tgaaaggaga agtttttcta caaattaaat
      661 ctataagtga tacagctttg gcagagatag atatgttaaa taaaagtctg acagtgtccc
      721 agagaaataa ggtatgcctg gaagaggaaa tgaaaagtct caaattgttg tcggatgcag
      781 ccatattgag gtctcagcag atggaggcat ccaaacagca tgaagtgaac ttgcaagcca
      841 ggtgctatga gctgcagaag gaagcactag atttacagtg tcaagtagag gcacttgggt
      901 tgagacttca gaagacagca aaggagctgg acaactgtaa ggagatgctc atgaaaaaat
      961 ctaatgatgc tgaaagctgt gaaagagaac ttagaaaact gaagtttgag tccattatct
     1021 ctgagtcaag gcacaaaagg ctacttaaag aaaaagaaga ctctttaatt acttgccaac
     1081 aactatataa aaccgtacag gaagagctga caacaaaaga aagacaagag gaagatataa
     1141 aacggagaat caacctcaca gaaaatgaac tagagatgac taaatctctc ctgcttcaga
     1201 cacaggaaga aattttaaca ctgaaaaatg aaagggaatt gatgctggtt tctcatcaga
     1261 aaagcatcga gcagctgcag gaaaccctga gacagaagct gctgagcgat gacagctggc
     1321 gggagaagat tgaagctgag ctcagcaagg aaagagcccg gcatctcatt gagttccagg
     1381 atcaagctct tctctttaag gaggaagcta aactggaact tgacattgaa aaagaaaagc
     1441 accaggaaat aatccggaag tatcagcaag aacatgagga cctgcagagg aagataggtg
     1501 acctaatcgc agatgctaca aaggacctga ggctggaagt ggcctctctc caagaaaaac
     1561 tgcatgaatc ccatgcacaa tacacagaag agtctgaatc gaagaaaaaa gaaattgaag
     1621 acctgaaaaa tctggtagca gaattccagt gtcgtttgaa acaggaaact ggccgtgatg
     1681 attcaatttc cgaagagttg aagaaggaaa tgaaacagaa gtcagacgag ctggaaagag
     1741 taaggctggc ccagacacag ctgctgcagc agttcagcca gtcacaggaa gagaacactt
     1801 ttctccagga aaccgtgcgc agagagtgtg aagaacgctt tgaactaacg gaggctttga
     1861 gtcaagccaa agaacagctc ctggagctca ggaggagcgg aggaaactta ccgtgttccc
     1921 tcaataaggg caccctaacc taccctgcct cggcagtcag taatcaccgc gagctaagca
     1981 gtgggagaca gaactgtgga cgaggcaccg gcacgcccag cctgcgtgga ctgccaaaac
     2041 ccacagcttc cccgacccca gataagctca agaaggtcag cagctcggga ctgcctgccc
     2101 tttcccaggc atatcctccc aggggccgag caatttcagt aaacgaggcc aggcagaggt
     2161 tgacagccat ccttcgcagg aggttgagtc agcagtgatg a
//
