LOCUS       NM_001405419            2406 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus low density lipoprotein receptor class A domain
            containing 2 (Ldlrad2), transcript variant 2, mRNA.
ACCESSION   NM_001405419 XM_006539013
VERSION     NM_001405419.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2406)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX000694.9.
            
            [WARNING] On Jul 9, 2024 this sequence was replaced by
            NM_001405419.2.
            
            On Apr 22, 2022 this sequence version replaced XM_006539013.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: ERR3363660.845857.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-241               BX000694.9         13553-13793         c
            242-694             BX000694.9         9894-10346          c
            695-826             BX000694.9         6187-6318           c
            827-967             BX000694.9         5202-5342           c
            968-2406            BX000694.9         2549-3987           c
FEATURES             Location/Qualifiers
     source          1..2406
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 69.99 cM"
     gene            1..2406
                     /gene="Ldlrad2"
                     /note="low density lipoprotein receptor class A domain
                     containing 2"
                     /db_xref="GeneID:435811"
                     /db_xref="MGI:MGI:3588210"
     exon            1..241
                     /gene="Ldlrad2"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..1197
                     /gene="Ldlrad2"
                     /note="isoform 2 precursor is encoded by transcript
                     variant 2; low density lipoprotein receptor A domain
                     containing 2"
                     /codon_start=1
                     /product="low-density lipoprotein receptor class A
                     domain-containing protein 2 isoform 2 precursor"
                     /protein_id="NP_001392348.1"
                     /db_xref="GeneID:435811"
                     /db_xref="MGI:MGI:3588210"
                     /translation="MAFLWQLPQRLLLLGTTALTVSALGTADLTDLCGQTWQEDALQL
                     RSHSASRKFYFVTPDTDCILWLRAAAPEDRMRFQFRFFLVYSLSSAIRITAATQATAA
                     TPTTKASSRDPCAPGSYLQFYDGPQEAPRALGPPICGLTIPAPFTSSGPWLGLRLVTR
                     GRQPRVDFLGEVTSFHLGSCGTYFRCRNGRCVPRSLLCDDWNMDNCGDGSDQDSRPPA
                     SCGGPSLVPKEMGTLEDNSSKALTLLVAPGSTAERTPPEGLAPITQEVLEGPWLWWVA
                     LASSMLLTCTGLLWCCCCPGWLAWHPGAHRLRLRCCAACNVCHLCPGRVAPGGLWLSW
                     PAFQNQGGHR"
     exon            242..694
                     /gene="Ldlrad2"
                     /inference="alignment:Splign:2.1.0"
     exon            695..826
                     /gene="Ldlrad2"
                     /inference="alignment:Splign:2.1.0"
     exon            827..967
                     /gene="Ldlrad2"
                     /inference="alignment:Splign:2.1.0"
     exon            968..2406
                     /gene="Ldlrad2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acctgggagg gagagcccag aacacagtga ggagacctga ggagcctccc tgtccccttg
       61 tgccctgctc atttcctaga gcagccaggg cctgcacccc aggctcccca aaggcctaca
      121 ggagattgcg caggtctgcc ccctgctggg cacagatcca ggatggcttt tctttggcag
      181 ctgccccaaa ggctgctcct gttggggaca accgccttga ctgtgtctgc cttggggaca
      241 gcggacctga cggacctgtg cggacagacc tggcaggaag acgcgctgca gctgcgctcg
      301 cactcggctt cacgcaagtt ctacttcgtg actccggaca ctgactgcat tctgtggttg
      361 cgtgctgcag cccctgaaga caggatgcgc ttccagttcc gcttctttct ggtttacagc
      421 ctgtcctcgg ccatccggat caccgcagcc acccaggcca ctgcggccac accaacaacc
      481 aaagcatcct cccgcgaccc gtgcgcaccg ggctcctacc tgcaattcta cgacggcccg
      541 caagaggcgc cccgggccct ggggcctccg atctgtggcc tgaccattcc agccccattc
      601 acgtcctctg ggccctggct tggcttgcgc ttggtcacta ggggccgcca accccgggtg
      661 gactttttgg gcgaggtcac ctctttccac ctggggtctt gcggcaccta cttccgctgt
      721 cggaatggca gatgtgtgcc ccggagcctc ctatgtgatg actggaacat ggacaactgc
      781 ggcgacggca gtgaccagga ctcccgtccc ccagccagct gtggaggtcc ctctctggta
      841 cccaaggaga tggggacatt ggaagataac agttccaagg cgctgactct tcttgtggct
      901 cctggttcca cagctgagcg gacccctcca gaaggcctgg cgcccatcac acaagaagtg
      961 ttggaaggtc cctggctctg gtgggtggct ctggcctcct caatgctgct gacctgcact
     1021 ggcctcctct ggtgctgctg ttgcccaggt tggctggcct ggcacccagg tgcccacagg
     1081 ctccgcctca gatgctgtgc agcctgcaat gtttgtcacc tatgtcctgg ccgggtggct
     1141 cctgggggtc tgtggctgag ctggccggcc ttccagaacc agggaggtca tcgttagggg
     1201 gctgtagtga tcagttgatt aggctctggg ctctgacagg cctgggcttt aagctctttt
     1261 agctggctga cttggaagag gtcacttggt tctttgaccc tcagtctgtc tctctgagaa
     1321 atggaccatg tctggttccc aaacaaggta aaggttgcag aaaacaggag gatcaggcca
     1381 gcctggtcta catatagagt tctaggacag ccgtggctcc aaggagagac actgtcacaa
     1441 aaaaacaaac aaacaaacaa acaaaaaaaa cccaagccat atcaatccaa accaaagcaa
     1501 gagagatgtc tcagtggtta agagcactgg ctgctcttct tgaggtcctg agttcaaatc
     1561 ccagaaccca cgtggcagct cacaactgtc tataattcca gttccagggg atccaacacc
     1621 ctattctcct ggtttcctca gatatcaggt acacacgtgg taggggaaaa aaaaaaagaa
     1681 agaccagacc taagaacaca acagaccaaa gaatgataca atctcttgtc ctgggtcaaa
     1741 tacagggaag gacacctgaa gtagggctac agtgatcacc agcagctggt ggtgtcctag
     1801 atggaagggt gaagcacttg ggacagtgtc ctgatgtggg ggcctcagtg cagcaggtct
     1861 ccctgcttgt cttttgtttg agttgcgaac tattgggacc cagctccatg gcggctggca
     1921 acactaactg ggacgttaaa ctcaaactat agcagggcct ctctgcgtct cgggctgttg
     1981 ccttcaccgg ggcctcttca aaccttctgt agttgttctg tggtacagca cgcacctata
     2041 tacccgtaga tatacacaag acaacgagac gtgccctgag acgtctgaga attaccatta
     2101 gtcactacga ctggaaggag aggatctgag attgccaagg gtcatgtctg agagagaagc
     2161 tgtagccaat gatatatttt ttgttttgtt ttgttttttg tttttttttc tctgtttagt
     2221 cctggctgtc ctggaactca ctctgtagac caggctagcc tcgaactcag aaattcgcct
     2281 gcctctgcct ctgcctccca agtgctggga ttaaaggcgt gtgccaccac gcccagctgc
     2341 agccaatgat atttgacgta gcttatataa atttattgtc actcaataaa gcttgatttg
     2401 tgggaa
//
