LOCUS       NM_029959                839 bp    mRNA    linear   ROD 26-NOV-2024
DEFINITION  Mus musculus lipocalin 9 (Lcn9), mRNA.
ACCESSION   NM_029959
VERSION     NM_029959.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Sakurai,N., Fujihara,Y., Kobayashi,K. and Ikawa,M.
  TITLE     CRISPR/Cas9-mediated disruption of lipocalins, Ly6g5b, and Ly6g5c
            causes male subfertility in mice
  JOURNAL   Andrology 12 (5), 981-990 (2024)
   PUBMED   36428102
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Wang,X., Qiu,F., Yu,J., Zhou,M., Zuo,A., Xu,X., Sun,X.Y. and
            Wang,Z.
  TITLE     Transcriptome profiling of the initial segment and proximal caput
            of mouse epididymis
  JOURNAL   Front Endocrinol (Lausanne) 14, 1190890 (2023)
   PUBMED   37324270
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 839)
  AUTHORS   Gong,Q.Q., Wang,X., Dou,Z.L., Zhang,K.Y., Liu,X.G., Gao,J.G. and
            Sun,X.Y.
  TITLE     A novel mouse line with epididymal initial segment-specific
            expression of Cre recombinase driven by the endogenous Lcn9
            promoter
  JOURNAL   PLoS One 16 (7), e0254802 (2021)
   PUBMED   34310634
  REMARK    GeneRIF: A novel mouse line with epididymal initial
            segment-specific expression of Cre recombinase driven by the
            endogenous Lcn9 promoter.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 839)
  AUTHORS   Wen,Z., Liu,D., Zhu,H., Sun,X., Xiao,Y., Lin,Z., Zhang,A., Ye,C.
            and Gao,J.
  TITLE     Deficiency for Lcn8 causes epididymal sperm maturation defects in
            mice
  JOURNAL   Biochem Biophys Res Commun 548, 7-13 (2021)
   PUBMED   33631677
REFERENCE   5  (bases 1 to 839)
  AUTHORS   Charkoftaki,G., Wang,Y., McAndrews,M., Bruford,E.A., Thompson,D.C.,
            Vasiliou,V. and Nebert,D.W.
  TITLE     Update on the human and mouse lipocalin (LCN) gene family,
            including evidence the mouse Mup cluster is result of an
            'evolutionary bloom'
  JOURNAL   Hum Genomics 13 (1), 11 (2019)
   PUBMED   30782214
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   6  (bases 1 to 839)
  AUTHORS   Suzuki,K., Lareyre,J.J., Sanchez,D., Gutierrez,G., Araki,Y.,
            Matusik,R.J. and Orgebin-Crist,M.C.
  TITLE     Molecular evolution of epididymal lipocalin genes localized on
            mouse chromosome 2
  JOURNAL   Gene 339, 49-59 (2004)
   PUBMED   15363845
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK020305.1.
            
            On Apr 6, 2007 this sequence version replaced NM_029959.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK020305.1, AF435738.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-839               AK020305.1         3-841
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 18.15 cM"
     gene            1..839
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /note="lipocalin 9"
                     /db_xref="GeneID:77704"
                     /db_xref="MGI:MGI:1924954"
     exon            1..103
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..544
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /note="epididymal-specific lipocalin-9; MUP-like
                     lipocalin"
                     /codon_start=1
                     /product="epididymal-specific lipocalin-9 precursor"
                     /protein_id="NP_084235.1"
                     /db_xref="CCDS:CCDS15792.1"
                     /db_xref="GeneID:77704"
                     /db_xref="MGI:MGI:1924954"
                     /translation="MVLLLVLGLVLSLATAQFNLHTAVRRDYNLARISGTWYLDSIAS
                     DNMTRIEENGDLRLFIRNIKLLNNGSLQFDFHFMLQGECVAVTMVCEKTKNNGEFSVA
                     YEGKNKVLLLETDYSMYIIFYMQNIKNGTKTQVLALYGRSILLDKTHQREFENICNLY
                     GLDSQNIIDMTKKDFCFL"
     exon            104..240
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            241..314
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            315..425
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            426..527
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            528..572
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            573..839
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /inference="alignment:Splign:2.1.0"
     polyA_site      839
                     /gene="Lcn9"
                     /gene_synonym="9230102I19Rik"
                     /note="putative"
ORIGIN      
        1 agagagaatg gtactactac tagtcctggg cctggtgctg agcctggcca ctgcgcagtt
       61 caacctgcat actgctgtgc ggagagacta caacctggcc aggatttccg ggacctggta
      121 cctcgattcc atagcctcag ataacatgac tcgcattgaa gaaaatggag acctgaggct
      181 cttcatccgg aacatcaagc tcttaaataa cggcagcctg cagtttgact tccatttcat
      241 gttgcaagga gaatgtgtag ctgtgaccat ggtctgtgaa aagactaaga ataatgggga
      301 gttctctgtt gcctatgagg ggaaaaacaa ggtgctgctc ttggagaccg actacagcat
      361 gtatatcatc ttctacatgc agaacatcaa gaatgggacc aagacccaag tgctggcact
      421 ctatgggcgc tccatactgc ttgacaagac tcatcagaga gaatttgaaa acatctgcaa
      481 tctatatggg ctggactcac aaaatatcat cgacatgaca aaaaaagatt tttgcttttt
      541 atagaccata gaggaaccag ccaggccttc tgctttgcac cccagagagt tgagatccag
      601 gcactgcgga gacagcatta ggcatcctct ttctttctga tgctggccag cattgggcat
      661 cctctttctt tctgatgctg gcctgtggtc atatctccgt actctaggcc tctgtcttca
      721 catggccttc tgtgtctgca tttcctcctc tgccaatgag atttaagcca ccaagacatt
      781 caaactgatc ttaactcatg tatgaagact tttgccaaat aaagttcctc ctttggttc
//
