LOCUS       NM_029958                745 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus lipocalin 12 (Lcn12), mRNA.
ACCESSION   NM_029958 XM_130143
VERSION     NM_029958.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Charkoftaki,G., Wang,Y., McAndrews,M., Bruford,E.A., Thompson,D.C.,
            Vasiliou,V. and Nebert,D.W.
  TITLE     Update on the human and mouse lipocalin (LCN) gene family,
            including evidence the mouse Mup cluster is result of an
            'evolutionary bloom'
  JOURNAL   Hum Genomics 13 (1), 11 (2019)
   PUBMED   30782214
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Suzuki,K., Lareyre,J.J., Sanchez,D., Gutierrez,G., Araki,Y.,
            Matusik,R.J. and Orgebin-Crist,M.C.
  TITLE     Molecular evolution of epididymal lipocalin genes localized on
            mouse chromosome 2
  JOURNAL   Gene 339, 49-59 (2004)
   PUBMED   15363845
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AY299493.1.
            
            On Jan 24, 2005 this sequence version replaced XM_130143.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY299493.1, BC111100.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="B6D2F1"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 17.3 cM"
     gene            1..745
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /note="lipocalin 12"
                     /db_xref="GeneID:77701"
                     /db_xref="MGI:MGI:1924951"
     exon            1..169
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             56..637
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /note="epididymal-specific lipocalin-12"
                     /codon_start=1
                     /product="epididymal-specific lipocalin-12 precursor"
                     /protein_id="NP_084234.1"
                     /db_xref="CCDS:CCDS15776.1"
                     /db_xref="GeneID:77701"
                     /db_xref="MGI:MGI:1924951"
                     /translation="MGPWWALWLILTLPQILESQISAMSQGFPQMTSFQSDQFQGEWF
                     VLGLADNTFRREHRALLNFFTTLFELKEKSQFQVTNSMTRGKHCNTWSYTLIPATKPG
                     QFTRDNRGSGPGADRENIQVIETDYITFALVLSLRQTSSQNITRVSLLGRNWRLSHKT
                     IDKFICLTRTQNLTKDNFLFPDLSDWLPDPQVC"
     exon            170..306
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            307..383
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            384..506
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            507..608
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            609..716
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      692..697
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      716
                     /gene="Lcn12"
                     /gene_synonym="9230102M18Rik"
                     /note="major polyA site"
ORIGIN      
        1 ccagcagccg ctcctcgggc aggctgtgtc cttctggagc ctggtggctg ttgggatggg
       61 cccttggtgg gctctgtggc tgatactcac cctgccccaa atcctggaga gtcagatctc
      121 agccatgtct caaggctttc cccagatgac aagcttccaa agtgaccagt ttcagggaga
      181 gtggtttgtc ctcggtctgg cagacaacac cttcaggaga gagcaccggg ccttgctgaa
      241 tttcttcact acattgtttg agctgaaaga gaaaagtcag tttcaggtga ccaactccat
      301 gactcggggc aagcactgca acacttggtc ctataccctg atcccagcaa ccaagcctgg
      361 gcaattcacc agggacaaca gagggtcagg gcctggggca gacagagaga atatacaggt
      421 catagagaca gactacatca cgtttgccct ggtgctgtcc ctcagacaga caagcagcca
      481 gaacatcaca agggtcagcc ttctgggtag aaactggaga ctttctcata agacaataga
      541 caagttcatc tgcctgacca ggacccaaaa cctcacaaag gataacttcc tctttcctga
      601 tttgagtgac tggttaccgg atccacaagt ctgctgaaga aggaacaggt tcctgccagt
      661 agagcctcac cctgcctctg ctctcaacac aaataaacac actgcctatg actccaaaaa
      721 aaaaaaaaaa aaaaaaaaaa aaaaa
//
