LOCUS       NM_001100455             652 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus lipocalin 11 (Lcn11), mRNA.
ACCESSION   NM_001100455 XM_130103 XM_913838
VERSION     NM_001100455.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Charkoftaki G, Wang Y, McAndrews M, Bruford EA, Thompson DC,
            Vasiliou V and Nebert DW.
  TITLE     Update on the human and mouse lipocalin (LCN) gene family,
            including evidence the mouse Mup cluster is result of an
            'evolutionary bloom'
  JOURNAL   Hum Genomics 13 (1), 11 (2019)
   PUBMED   30782214
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Suzuki K, Lareyre JJ, Sanchez D, Gutierrez G, Araki Y, Matusik RJ
            and Orgebin-Crist MC.
  TITLE     Molecular evolution of epididymal lipocalin genes localized on
            mouse chromosome 2
  JOURNAL   Gene 339, 49-59 (2004)
   PUBMED   15363845
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX649340.3 and BE864901.1.
            
            On Oct 2, 2009 this sequence version replaced NM_001100455.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript from the same
            strain was available for the full length of the gene. The extent of
            this transcript is supported by transcript alignments and
            orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AI391171.1, BX526077.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849381,
                                           SAMN00849383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-115               BX649340.3         74598-74712
            116-182             BX649340.3         75279-75345
            183-637             BE864901.1         1-455
            638-652             BX649340.3         77846-77860
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 18.02 cM"
     gene            1..652
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /note="lipocalin 11"
                     /db_xref="GeneID:227630"
                     /db_xref="MGI:MGI:2684955"
     exon            1..115
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..556
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /codon_start=1
                     /product="lipocalin 11 precursor"
                     /protein_id="NP_001093925.1"
                     /db_xref="CCDS:CCDS50536.1"
                     /db_xref="GeneID:227630"
                     /db_xref="MGI:MGI:2684955"
                     /translation="MPRRHSRGMKLLLLLSVGLGLTWALQDFHPEQVTGPWHTLKLAS
                     TDRSLIEEGGAYRCFMTDIVLLDNGNLNVTYFHRKDGKCVKEFYIAEKTDTPGQYTFE
                     YQGRNSLTFVHVTEDFAIMDLENQSEGGTTIVIEFHGRSLSTDELGWERYLVHTRRRG
                     IAPENIVDLSLSRRCDTH"
     exon            116..252
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /inference="alignment:Splign:2.1.0"
     exon            253..326
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /inference="alignment:Splign:2.1.0"
     exon            327..434
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /inference="alignment:Splign:2.1.0"
     exon            435..536
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /inference="alignment:Splign:2.1.0"
     exon            537..652
                     /gene="Lcn11"
                     /gene_synonym="Gm109"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccacattg tgagtgctca tgccaagaag acacagcaga ggaatgaagc ttctactgct
       61 gctgagtgtg gggctgggcc tgacctgggc cctgcaggac ttccaccctg agcaggtaac
      121 aggaccttgg cacaccctca agctggcttc cactgaccgg tctctcattg aggaaggagg
      181 tgcctatcgg tgcttcatga ctgacattgt cctcctggac aatggcaacc tgaatgtcac
      241 ctacttccac aggaaagatg gaaagtgtgt gaaggaattc tacatcgcag agaagactga
      301 cacacctgga cagtacacct ttgagtacca aggcagaaac tctctgactt ttgtgcatgt
      361 tactgaggac ttcgccatca tggacttgga aaaccagagt gaagggggca ccaccattgt
      421 aattgagttc cacggcagga gtctgtccac agatgagctc ggatgggaac gctatctcgt
      481 tcacacacgc agaagaggca tcgcaccaga gaacattgtg gacctttcct tatctcgtcg
      541 atgtgacaca cactagtcaa catttccatg acccacatct cttgaagctt ctgccttcca
      601 acgctgaccc acccttctcc gtgtagtaaa taaactcagt atctgctcaa ga
//
