LOCUS       NM_001254725             607 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus late cornified envelope 3E (Lce3e), mRNA.
ACCESSION   NM_001254725 XM_001478585 XM_003086313
VERSION     NM_001254725.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC132274.3.
            
            On or before Dec 29, 2011 this sequence version replaced
            XM_001478585.2, XM_003086313.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EH106936.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849376, SAMN00849383
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-47                AC132274.3         35800-35846         c
            48-607              AC132274.3         34626-35185         c
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.14 cM"
     gene            1..607
                     /gene="Lce3e"
                     /gene_synonym="2310001H18Rik"
                     /note="late cornified envelope 3E"
                     /db_xref="GeneID:69514"
                     /db_xref="MGI:MGI:1916764"
     exon            1..47
                     /gene="Lce3e"
                     /gene_synonym="2310001H18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            48..607
                     /gene="Lce3e"
                     /gene_synonym="2310001H18Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..361
                     /gene="Lce3e"
                     /gene_synonym="2310001H18Rik"
                     /codon_start=1
                     /product="late cornified envelope protein"
                     /protein_id="NP_001241654.1"
                     /db_xref="CCDS:CCDS57229.1"
                     /db_xref="GeneID:69514"
                     /db_xref="MGI:MGI:1916764"
                     /translation="MSCQQSQKQCQPPPKCPSPKCSPKCPPKSTTQCLPAASSCCATS
                     SGGCSLPSSEGGCCLSHHRRRSHRCRRRSSSSCDRGSGQQSGGSGCSHSSGGCC"
     regulatory      586..591
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lce3e"
                     /gene_synonym="2310001H18Rik"
                     /note="hexamer: AATAAA"
     polyA_site      607
                     /gene="Lce3e"
                     /gene_synonym="2310001H18Rik"
                     /note="major polyA site"
ORIGIN      
        1 agccacagct tcttcatcac agtattctcc tgcttttgca gtatctggtc cagttcctgc
       61 cgagatgtcc tgccagcaga gccagaagca gtgccagcct cctcccaagt gcccttcccc
      121 aaagtgctcc ccaaagtgcc ccccaaagag cacaacacag tgtctgcctg cagcctcttc
      181 ctgctgtgct acaagctctg ggggctgcag tctccccagc tctgagggag gctgctgcct
      241 gagccaccac aggcgcaggt cccacagatg caggcgcagg agctccagtt cctgtgaccg
      301 tggcagtggt cagcagtctg ggggttcagg ctgcagccac agctctgggg gctgctgctg
      361 acctggatcc ggaggcggag acaaggaatt tcagagaaaa aaagaatctc aggagccaag
      421 gaaaattcag cccgtctttt ccattcccag gggccctgct gacttcttct atccagagtt
      481 tcaacttccc tagtaacttc tcttcctgtc tgttgtctgg gaccccacag tcctcattcc
      541 ctggtagctt aggacttcat atgtcctata catatccatt tcaaaaataa agctgctcga
      601 actgtaa
//
