LOCUS       NM_026394                768 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus late cornified envelope 1F (Lce1f), mRNA.
ACCESSION   NM_026394
VERSION     NM_026394.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Dickinson,M.E., Flenniken,A.M., Ji,X., Teboul,L., Wong,M.D.,
            White,J.K., Meehan,T.F., Weninger,W.J., Westerberg,H., Adissu,H.,
            Baker,C.N., Bower,L., Brown,J.M., Caddle,L.B., Chiani,F., Clary,D.,
            Cleak,J., Daly,M.J., Denegre,J.M., Doe,B., Dolan,M.E., Edie,S.M.,
            Fuchs,H., Gailus-Durner,V., Galli,A., Gambadoro,A., Gallegos,J.,
            Guo,S., Horner,N.R., Hsu,C.W., Johnson,S.J., Kalaga,S., Keith,L.C.,
            Lanoue,L., Lawson,T.N., Lek,M., Mark,M., Marschall,S., Mason,J.,
            McElwee,M.L., Newbigging,S., Nutter,L.M., Peterson,K.A.,
            Ramirez-Solis,R., Rowland,D.J., Ryder,E., Samocha,K.E.,
            Seavitt,J.R., Selloum,M., Szoke-Kovacs,Z., Tamura,M., Trainor,A.G.,
            Tudose,I., Wakana,S., Warren,J., Wendling,O., West,D.B., Wong,L.,
            Yoshiki,A., MacArthur,D.G., Tocchini-Valentini,G.P., Gao,X.,
            Flicek,P., Bradley,A., Skarnes,W.C., Justice,M.J., Parkinson,H.E.,
            Moore,M., Wells,S., Braun,R.E., Svenson,K.L., de Angelis,M.H.,
            Herault,Y., Mohun,T., Mallon,A.M., Henkelman,R.M., Brown,S.D.,
            Adams,D.J., Lloyd,K.C., McKerlie,C., Beaudet,A.L., Bucan,M. and
            Murray,S.A.
  CONSRTM   International Mouse Phenotyping Consortium; Jackson Laboratory;
            Infrastructure Nationale PHENOMIN, Institut Clinique de la Souris
            (ICS); Charles River Laboratories; MRC Harwell; Toronto Centre for
            Phenogenomics; Wellcome Trust Sanger Institute; RIKEN BioResource
            Center
  TITLE     High-throughput discovery of novel developmental phenotypes
  JOURNAL   Nature 537 (7621), 508-514 (2016)
   PUBMED   27626380
  REMARK    Erratum:[Nature. 2017 Nov 16;551(7680):398. PMID: 29144450]
REFERENCE   3  (bases 1 to 768)
  AUTHORS   Koscielny,G., Yaikhom,G., Iyer,V., Meehan,T.F., Morgan,H.,
            Atienza-Herrero,J., Blake,A., Chen,C.K., Easty,R., Di Fenza,A.,
            Fiegel,T., Grifiths,M., Horne,A., Karp,N.A., Kurbatova,N.,
            Mason,J.C., Matthews,P., Oakley,D.J., Qazi,A., Regnart,J.,
            Retha,A., Santos,L.A., Sneddon,D.J., Warren,J., Westerberg,H.,
            Wilson,R.J., Melvin,D.G., Smedley,D., Brown,S.D., Flicek,P.,
            Skarnes,W.C., Mallon,A.M. and Parkinson,H.
  TITLE     The International Mouse Phenotyping Consortium Web Portal, a
            unified point of access for knockout mice and related phenotyping
            data
  JOURNAL   Nucleic Acids Res 42 (Database issue), D802-D809 (2014)
   PUBMED   24194600
REFERENCE   4  (bases 1 to 768)
  AUTHORS   Brown,S.J., Tilli,C.M., Jackson,B., Avilion,A.A., MacLeod,M.C.,
            Maltais,L.J., Lovering,R.C. and Byrne,C.
  TITLE     Rodent Lce gene clusters; new nomenclature, gene organization, and
            divergence of human and rodent genes
  JOURNAL   J Invest Dermatol 127 (7), 1782-1786 (2007)
   PUBMED   17410201
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK003518.1 and BC060283.1.
            
            On Sep 14, 2007 this sequence version replaced NM_026394.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC060283.1, AK003518.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849376
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                AK003518.1         2-93
            93-93               BC060283.1         77-77
            94-685              AK003518.1         95-686
            686-768             BC060283.1         670-752
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 40.14 cM"
     gene            1..768
                     /gene="Lce1f"
                     /gene_synonym="1110055J05Rik"
                     /note="late cornified envelope 1F"
                     /db_xref="GeneID:67828"
                     /db_xref="MGI:MGI:1915078"
     exon            1..42
                     /gene="Lce1f"
                     /gene_synonym="1110055J05Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            43..717
                     /gene="Lce1f"
                     /gene_synonym="1110055J05Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             65..508
                     /gene="Lce1f"
                     /gene_synonym="1110055J05Rik"
                     /codon_start=1
                     /product="late cornified envelope 1F"
                     /protein_id="NP_080670.2"
                     /db_xref="CCDS:CCDS38515.1"
                     /db_xref="GeneID:67828"
                     /db_xref="MGI:MGI:1915078"
                     /translation="MSCQQSQQQCQPPPKCTPKCPPKCQTPKCPPKCPPKCPPKCPPV
                     SSCCSLGSGGCCGSSSGGCCSSGGCCSSGGGGCCLSHHRPRRSLRRHRHSSGCCSSGG
                     SSGCCGSSGGSSGCCGSSGGSSGCCGSSGGSSGCCGSSQQSGDCC"
     regulatory      694..699
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Lce1f"
                     /gene_synonym="1110055J05Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      717
                     /gene="Lce1f"
                     /gene_synonym="1110055J05Rik"
                     /note="major polyA site"
ORIGIN      
        1 atccacgcca ttaacactga tcttgtgctg tccacagtct tgctcctgaa cacccacagc
       61 tgagatgtcc tgtcagcaga gccagcagca gtgccagccc cctcccaagt gcacccccaa
      121 gtgccctccc aagtgccaga ctccaaagtg ccctccaaaa tgcccgccca aatgtcctcc
      181 caagtgcccc cctgtgtctt cctgctgtag cctgggttct gggggctgct gtggctccag
      241 ctctggaggc tgctgtagct ctggaggatg ctgcagctca gggggtggag gctgctgcct
      301 gagccaccac agaccccgca gatctcttcg tcgccatcgt cacagctctg gatgttgtag
      361 cagtggtggc agcagtggct gctgtggcag cagtggtggc agcagtggct gctgtggcag
      421 cagtggtggc agcagtggct gctgtggaag cagtggtggc agcagtggct gttgtggcag
      481 tagccagcag tctggggatt gctgctgacc tgtatgagga agacttcgga caaatggtgc
      541 aggaggagca catgctccga agactcccca atgcctgatt ctctctcctc ctgtttccct
      601 cctggccctg tcctctgaaa tgctgaaatc tcctgtgaaa tgttctgcat tctgttcagg
      661 tgataacaat gtccctttgc atatttgtta agaattaaaa ataagcatgg acaaatgaaa
      721 aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaa
//
