LOCUS       NM_001363337             908 bp    mRNA    linear   ROD 05-JUN-2024
DEFINITION  Mus musculus keratinocyte associated protein 3 (Krtcap3),
            transcript variant 1, mRNA.
ACCESSION   NM_001363337 XM_006504093
VERSION     NM_001363337.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC114619.9.
            
            On May 17, 2018 this sequence version replaced XM_006504093.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Variants 1 and 2 both encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BU522299.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-109               AC114619.9         76529-76637         c
            110-294             AC114619.9         76240-76424         c
            295-354             AC114619.9         76092-76151         c
            355-561             AC114619.9         75772-75978         c
            562-696             AC114619.9         75554-75688         c
            697-804             AC114619.9         75341-75448         c
            805-908             AC114619.9         75146-75249         c
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 17.27 cM"
     gene            1..908
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /note="keratinocyte associated protein 3"
                     /db_xref="GeneID:69815"
                     /db_xref="MGI:MGI:1917065"
     exon            1..109
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     CDS             82..804
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /note="keratinocytes associated protein 3; KCP-3"
                     /codon_start=1
                     /product="keratinocyte-associated protein 3"
                     /protein_id="NP_001350266.1"
                     /db_xref="CCDS:CCDS51459.1"
                     /db_xref="GeneID:69815"
                     /db_xref="MGI:MGI:1917065"
                     /translation="MRCCGVCAFDAARGPRRLMRVGLALILVGHVNLLVGAVLHGTVL
                     RHVANPRGAVTPEYTTANVISVGSGLLSVSVGLVALLASRNLLRPRLHWALLTLALVN
                     LLLSAACSMGLLLAVSLTVANGGRRLIADCHPGLMDPSIPLDQGPGHTDCSFDPTRIY
                     DTALALWIPSLFMSAAEAALSGYCCVAALTLRGIGPCRKEGLQEQLQELTELELPECK
                     RQENVQLLHGRQDFQALQKTWV"
     exon            110..294
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     exon            295..354
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     exon            355..561
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     exon            562..696
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     exon            697..804
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     exon            805..908
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /inference="alignment:Splign:2.1.0"
     regulatory      888..893
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /note="hexamer: AATAAA"
     polyA_site      908
                     /gene="Krtcap3"
                     /gene_synonym="2010001C09Rik; Kcp3"
                     /note="major polyA site"
ORIGIN      
        1 cggaagcggc gcttgaggtc ggcgtcggga caaagccagg tccaggtaga gcctatgggc
       61 ggagggagta gagcggccac gatgaggtgc tgcggcgtct gcgccttcga tgccgcccga
      121 gggcccaggc ggctgatgcg cgtgggactc gcgctgatcc tggtgggcca cgtgaacctc
      181 ctggtgggag ctgtgttgca tggtactgtt ctgcggcacg tggccaaccc ccgaggcgcg
      241 gtcactcctg agtacaccac agccaatgtc atttctgtgg gttcgggact actgagcgtt
      301 tcagtgggac ttgtggccct cttggcatcc aggaaccttc ttcgcccacg actgcactgg
      361 gccctgctga cgctggcctt ggtgaacctg ctcttgtctg ctgcctgctc catgggcctc
      421 ctcctggctg tatcgctcac tgttgccaat ggtggccgcc gtcttattgc tgattgccac
      481 ccaggactga tggatccttc cataccgctg gaccaggggc ctggacacac tgactgctcc
      541 tttgatccca caagaattta tgatacagct ttggctctct ggatcccttc tctgttcatg
      601 tctgcagctg aggctgctct ttctggttac tgttgtgtgg ctgcactcac gctacgggga
      661 attgggccct gcaggaagga agggttgcag gaacagctgc aggaactgac agagcttgaa
      721 cttcccgagt gtaaaaggca ggagaacgtg cagctgctcc atggccgtca ggacttccag
      781 gccttacaga agacctgggt ttaggcaggt gttcttctga ggcgcagtcc acaggtgttt
      841 tctactacgc acgggggccc tgaccctagg gtggtataaa taattgtaat aaaagaactt
      901 gtattttg
//
