LOCUS       NM_178610               4990 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Mus musculus KRR1, small subunit (SSU) processome component,
            homolog (yeast) (Krr1), mRNA.
ACCESSION   NM_178610
VERSION     NM_178610.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4990)
  AUTHORS   Yokoyama,S., Ito,Y., Ueno-Kudoh,H., Shimizu,H., Uchibe,K.,
            Albini,S., Mitsuoka,K., Miyaki,S., Kiso,M., Nagai,A., Hikata,T.,
            Osada,T., Fukuda,N., Yamashita,S., Harada,D., Mezzano,V., Kasai,M.,
            Puri,P.L., Hayashizaki,Y., Okado,H., Hashimoto,M. and Asahara,H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   2  (bases 1 to 4990)
  AUTHORS   McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
            Silver,P.A.
  TITLE     A genome-wide in situ hybridization map of RNA-binding proteins
            reveals anatomically restricted expression in the developing mouse
            brain
  JOURNAL   BMC Dev Biol 5, 14 (2005)
   PUBMED   16033648
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4990)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
REFERENCE   4  (bases 1 to 4990)
  AUTHORS   Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S.
  TITLE     Construction of long-transcript enriched cDNA libraries from
            submicrogram amounts of total RNAs by a universal PCR amplification
            method
  JOURNAL   Genome Res 11 (9), 1553-1558 (2001)
   PUBMED   11544199
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CD547185.1, AK041854.1 and AC167231.12.
            
            On Apr 9, 2009 this sequence version replaced NM_178610.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK032472.1, AK168675.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                CD547185.1         1-89
            90-1438             AK041854.1         2-1350
            1439-4990           AC167231.12        161950-165501
FEATURES             Location/Qualifiers
     source          1..4990
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="10"
                     /map="10 59.97 cM"
     gene            1..4990
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /note="KRR1, small subunit (SSU) processome component,
                     homolog (yeast)"
                     /db_xref="GeneID:52705"
                     /db_xref="MGI:MGI:1289274"
     exon            1..180
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            181..353
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            354..488
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            489..614
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            615..698
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            699..755
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            756..926
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            927..1004
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1098
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..4990
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2633..2638
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /note="hexamer: ATTAAA"
     polyA_site      2660
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /note="major polyA site"
     regulatory      2678..2683
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /note="hexamer: ATTAAA"
     polyA_site      2683
                     /gene="Krr1"
                     /gene_synonym="2610511F02Rik; D10Ertd773e; Hrb2"
                     /note="major polyA site"
ORIGIN      
        1 tagggattat ccggaactcg ttttgccttt tacacattgt agccggcggg atcttaaaga
       61 acagttccac ttccggggcc gccggaagca gttttgcgat ggcaacttct gcggaggcgc
      121 ctgccaaaga agctcaaaaa cgtgactctc agccgcagaa acagaagcgt gagacccaag
      181 atgaggcgga gctcctcact gtccctgatg gttggaagga accagctttt tccaaagagg
      241 acaatcccag aggactcttg gaggagagca gcttcgcaac cttgttcccg aaataccgcg
      301 aggcttacct gaaggagtgc tggccgctgg tgcagaaggc cttgaatgag catcatgtta
      361 aagcaacgct ggacttgatc gagggtagca tgactgtttg tacaacaaag aagacgtttg
      421 acccttacat catcattagg gcccgagacc taataaagct cttggccagg agcgtttcct
      481 ttgaacaggc agtacggata cttcaggatg atgttgcgtg tgacatcatt aaaatcggct
      541 ctctagtgag aaataaagag aggtttgtga agagaagaca gcggcttatt ggtcccaaag
      601 gatccacctt gaaggcactg gagctcctga caaactgcta cgtcatggtt caggggaaca
      661 cggtctcagc catcggacct ttcagtggcc tcaaagaggt tcgaaaagta gtccttgata
      721 ccatgaagaa tatccatcca atttataaca ttaaaacctt gatgattaaa cgggagttgg
      781 caaaagattc cgagttacga tcacaaagtt gggaaagatt tttgccacag ttcaagcaca
      841 aaaatgtgaa taaacgcaag gaaccgaaga agaagagtgt caagaaggag tacacgccct
      901 tcccgccccc acagccagag agtcagattg ataaagaatt ggccagtggt gaatactttt
      961 tgaaggcgag tcagaagaag cggcagaaaa tggaagcaat aaaggctaag caagcagaag
     1021 ctcttacaaa gaggcaggaa gaacgaaaca aagcgtttat tccacctaag gaaaagccag
     1081 ctgtgaagcc aaaggaagct tctaccgaaa ctaagattga tgtggctgct atcaaggaaa
     1141 aggttaagaa agcaaagacg aagaaactgg gcgctcttac agcggaggaa gttaagctca
     1201 agatggaggc tgacgaaaag aagcagaaga gaaaaaagta gcattgggaa aaaatcccga
     1261 actttctaag gtgtttcctt ttgtaaagga ttttgagatg cgaaggtttt agctgagtca
     1321 gactcaggaa atcatgacca gtttccttct gtttgtggcc gtatgctctg taaatataaa
     1381 tacgtaggag gtagatgcct acgtgtacat tgtgcccaac tggttccagg caagttttgc
     1441 ctagctgttt taggaatatc tgttatttta aattatatag atttttggaa tgagtcatca
     1501 aatccaatgt ttgttgccat tggttggtct tcataatact cagaacattt ggttttgagg
     1561 aaaatacgtg caaaatttcc acttaatttc ttttattatt ttactccagg atttaaaaaa
     1621 caacaacaga aaatccaagg cctctaaatc aaatctgtca ctgttctgag tgaggaaatg
     1681 gtaccaggaa aatgtatatg ggtatcttac cctgcagtaa gcatgtgggt cccttctccc
     1741 actgaggcca gaggagggca tagactccac tggaactaga ggtgtaggtg gtagtgagac
     1801 agtgtgggga ctggatatca gacactgggc tttgcaagag cagcaagaat tcttgagggc
     1861 aattggattt agaattatca acatgagtat tacagatctg gaaatctgag atttcctggg
     1921 cgtgcgttac tcgctgcagt ccttgctatg gcaacctggt cagtctgtat tcgtaatgcc
     1981 gaaagacaag ttaactctgt agacttagaa gaaattcttt tgactgagat tttattgaaa
     2041 agtttttaaa tagccgcatg tgattcagtt gtcccccaac cacagcttta gtccaaaaga
     2101 accaagttag gatatttgtg ctttacccag atggtaatta taacagacag taataggaga
     2161 accgacttag caatgagaaa gagagatgtg tatctgttac gcaggtatat aggccagtct
     2221 ggataatcga cagagtagta acctgtgaaa cgaagaagag tggactcagt ttcccatgct
     2281 gtgctaaccc agcctgcata gtgccccggg aaaacagctt aaggtttgca tacatacgtg
     2341 agacctggtc tcgtcgtggg ttaactgtaa aaccagaatt aagaaaaagt taggtgtagg
     2401 ggaagctgtg tttctaattc tttacaaccg tgaccttgat ttggctttaa gtacaatgat
     2461 tttcaaagat cagtccagtt ttggctgcag tatcaataag atatttttca gtctttttat
     2521 atgaacttga tatgtaaatt tttgtacaaa agacatatta ccaggatgat tgaaaaaaaa
     2581 catgccacaa ctaccagatg aatctggttt tgagctatgg ttgaaactaa agattaaaat
     2641 atgatttgta aataatgcaa ttaaagtatt tcttttaatt aaagtagttt gtttatgatg
     2701 aaggaggtag cagtttctca tccaacccag caggacacca aagtctcagc cgggtatctg
     2761 gcttatcaga tgatgtctcc ccctcccttc taagcagccc tacccagcct ggcttctgtg
     2821 agccaggctg ctacagaggt ggcagcaaag aaccatggga ttggcagagc tgcagtcgct
     2881 tttgctccct tcacactgtg gaaaaatcag acttcttaag ggcagtctgt taaactttcc
     2941 ctgcggcctc agctctgcct agtgtggctt acctaccagt gtggagagac acaagacccc
     3001 caggtctgga gcattagctc caaacttctg cccatgcatc ctttctttgt gcctagtatg
     3061 ttgagctggc ttctgggtct taccacggcc agctcaaaac acatgctcat accttaattt
     3121 tatggaaagt ttttattatc gtacttactg cagagactgt tgagacactt gtcatctttt
     3181 gggcaatcac tgcacgtggc tccttgctta tatggccacg ttgggtaatt tcctctggaa
     3241 agcagaagac cgttagtaca ggggccaatg agtgtcacgt gaatcctgtg tttatgaact
     3301 ttaatttata ctgtcacatt tatgaggagt cttaaggagg aattattttt gtttctgtta
     3361 aacaggtaag gaaactaaag atcttagaga ttaataattt gccaagatgt cagtttatat
     3421 gagtgaacca ggaaagaaaa aaaatctaga aatgtcttat gttgggctct ttctacttaa
     3481 cccattgcat atgtgataac ttccacccat acactgccta tcctagaaag gctattacac
     3541 tttgtaggtg ttttctgtgt accaggccat cgtggatttt actagataca ccgttcggct
     3601 ggggtaatga cctccagaag aaaaaagaaa attaggaaaa acttatttgt atgtaaatgt
     3661 gataataact gataactatt atctaatcaa atatcttagg gatagagaga actcagtaat
     3721 tgatctcttt aacatgtttg gactttttcc tatgcatcct ttgaggataa cttagtttca
     3781 tccatgctag gcaaatgttc tatcaatgta ccacattccc tagccccaac ccccaaaaag
     3841 caacttactc tgaaaccaaa agacagtaga agatacaggc atatacatac atacatacat
     3901 atgtataaat gttcatacat gcatgcatgt agggccggga atgaaatata gtatagtgtc
     3961 tttcattgtt aaaaagcaca acactccata agcagcctaa gttgtagaat ggttgtgatt
     4021 aaatcactat tatcttattt ttttaattgt ccattccaca ctaaaagaga agggggaaaa
     4081 tgtcacttaa aattggtaga tttggccagg cggtggtggc gcacaccttt aatcccagca
     4141 cttgggaggc agaggcaggt ggatttctga gttcgaggcc agcctggtct acagagtgag
     4201 ttctaggaca gccagggcta cacagagaag ccctgtctcg aaaaaccaaa aaaaaaaaaa
     4261 aaaaaaaaat tggtagattt gttttggggc aaacatgaaa caaggaagac ctgggctggt
     4321 ttgggtgaat ttccttaaga cagagagact ttactgtgct ctgccgaatc aagcagaata
     4381 gttttgaatt tgttctagaa accctgtgag ggggcggggc gtgagagggt tgggagcctg
     4441 ggaaagaggg aagacacaga atatgagcaa aggtccccaa ggggatggcc taaggtggca
     4501 gtgcccaaag aacactgggc acactcaggg ccgaagctta actcccctgt tctgagagcc
     4561 ctggagtcat gggttagaac atgtttatag agtatccccc atccacacac tgaaactgac
     4621 cacatattag gacacaaaca actctcaaga aacaggaaaa actgaaataa cattcaccct
     4681 gtacgaaagg aataacaata gcaacaaaaa ataagccaac acgtgaaaca tgtagagtat
     4741 tcccacacgg aacgattcag cattatctgt cagttttata attactggaa cctaacctgg
     4801 tgctatctga aaagttcaac tgtctaaagc ctcgaagtaa ttagtgttaa ctgagcagct
     4861 ctacttacgt tttgaagtgt gtgaaagttt gctctgattt aaacaaaata agttaatgtc
     4921 acttcccttt cctggtatta tggatatatc aatttacatc cttggcaagc attttaatca
     4981 tgctactctt
//
