LOCUS       NM_001354706            3193 bp    mRNA    linear   ROD 06-JUN-2024
DEFINITION  Mus musculus lysine-rich coiled-coil 1 (Krcc1), transcript variant
            2, mRNA.
ACCESSION   NM_001354706 XM_006506429
VERSION     NM_001354706.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Diez-Roux,G., Banfi,S., Sultan,M., Geffers,L., Anand,S., Rozado,D.,
            Magen,A., Canidio,E., Pagani,M., Peluso,I., Lin-Marq,N., Koch,M.,
            Bilio,M., Cantiello,I., Verde,R., De Masi,C., Bianchi,S.A.,
            Cicchini,J., Perroud,E., Mehmeti,S., Dagand,E., Schrinner,S.,
            Nurnberger,A., Schmidt,K., Metz,K., Zwingmann,C., Brieske,N.,
            Springer,C., Hernandez,A.M., Herzog,S., Grabbe,F., Sieverding,C.,
            Fischer,B., Schrader,K., Brockmeyer,M., Dettmer,S., Helbig,C.,
            Alunni,V., Battaini,M.A., Mura,C., Henrichsen,C.N.,
            Garcia-Lopez,R., Echevarria,D., Puelles,E., Garcia-Calero,E.,
            Kruse,S., Uhr,M., Kauck,C., Feng,G., Milyaev,N., Ong,C.K.,
            Kumar,L., Lam,M., Semple,C.A., Gyenesei,A., Mundlos,S., Radelof,U.,
            Lehrach,H., Sarmientos,P., Reymond,A., Davidson,D.R., Dolle,P.,
            Antonarakis,S.E., Yaspo,M.L., Martinez,S., Baldock,R.A., Eichele,G.
            and Ballabio,A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK146818.1, AC160090.4 and AW912446.1.
            
            On Aug 19, 2017 this sequence version replaced XM_006506429.3.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK146818.1, BC046798.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1685              AK146818.1         2-1686
            1686-2763           AC160090.4         109381-110458       c
            2764-3193           AW912446.1         1-430               c
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 32.14 cM"
     gene            1..3193
                     /gene="Krcc1"
                     /note="lysine-rich coiled-coil 1"
                     /db_xref="GeneID:57896"
                     /db_xref="MGI:MGI:1889377"
     exon            1..164
                     /gene="Krcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            165..331
                     /gene="Krcc1"
                     /inference="alignment:Splign:2.1.0"
     exon            332..3193
                     /gene="Krcc1"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1665..1670
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Krcc1"
                     /note="hexamer: AATAAA"
     polyA_site      1687
                     /gene="Krcc1"
                     /note="major polyA site"
     regulatory      3168..3173
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Krcc1"
                     /note="hexamer: AATAAA"
     polyA_site      3193
                     /gene="Krcc1"
ORIGIN      
        1 ctcctccccc cctcccaccc cgcctgctct gcggcggagg cggcggcggc ggcagcggtg
       61 tctctgcctc tccgccacct ccaccgcagc ctctgacccc cggccggcgt tgttggcggg
      121 gagggggaca gtagttgtag acgcccgccc ctgcctcaga gaaggtgaat gagagttgag
      181 tattagacaa aaatagatat aatctctact ccatggttta gctccctgat tgttgtagtc
      241 ttcactttgt ggagcattca tgctgaaaaa ctgaagcaat aaatggttga atatgatcag
      301 atttcaccat caagttctca gcctgataac gataatccct ttctgtcaac ctaatgaagc
      361 attcaaacaa gccatatgac tcttttcaag atgaacttga agattatatt aaagtacaga
      421 aagccagagg cttagagcca aagacttgtt tcagaaggat gagaggggag tatttggaaa
      481 gctgtgggta cagagaagag tttgattcca ggcccaggta tagaatgttt gatcagagac
      541 tcccatctgg aaccaaccat tcctacccaa gatcatgcag tagttcacag acagaagacc
      601 gggtacccca gtggttacca gctcatgaca agataagact aaactctctg agctactgtc
      661 aattcaccag ggatggcttc tcagaaaaac cagtcccctt gaaccttagt cagcaagaat
      721 acaattgtgg ctcatatagt gtagaatctg tagttcacaa gcgcctctgc tcagaacaca
      781 gtaccatcga ccctcaagtc agtcatagac aaatgcacca gaagaggaaa aaacatgtag
      841 aagagggcag agaaaagcag gaagaacggc ccaaacatga gaggaaaagg agttctgagg
      901 aaatggattt aaataaacat agaagcatcc aaagaaagaa aacaaaggca gaaacagaaa
      961 ctgtacagga tggtacagaa aagcttaaga atcgaaaaga gaaaaaaacc cgagatgtat
     1021 catctaagaa agaggaccgt aagcgtagga aggaaaaaaa ggaacaaggt gaagaaagga
     1081 cagaggagga gatgctttgg gaccagtcta ttcttggatt ttgaggctcc ttagatctcc
     1141 tgaggctcca ctgaaataac agtcaaggag cttggtttta tgtgcattca tattcatgtc
     1201 acttgcatat gtggacagaa gtttcaactt ctaacaaagt gaacatgaaa tatttagtgt
     1261 gctttccaac atggagatta cttttctatt ttctaaaaga tttattaact tttcttacat
     1321 atggtagaat ttccctttaa gagagtggct ctgcttttat tgaccaaatt gctgtggtag
     1381 tggacttatt ttcccttggg agatcattta tttaaaattg gaggattaac tgatggcttt
     1441 tgtggaatct atttcttggt tgggtttctt ttagttttga gtcacatatt tttatgctca
     1501 ctgtctttct ctatgaagca atttagattt ccttttttta gatctaactt gcaatatatt
     1561 ttctgggttg gaaagtgaaa taacataata attttatctt acatatagtt ttaaaagttt
     1621 cagagacttc acacaaaatc agtttatatt ctgaaaatgt ttataataaa gtatcttaat
     1681 ttctggatgt ttctttgtgt cagtgctctg ttctagtgat tctcttttgg aaagagaaaa
     1741 gcagtaacca ctttatatta aagattttag aggttagaac acactaaatg gttgtaaaaa
     1801 ttctttacct actgaattag gctcacaatt tataataaag agctttgatt catgataatt
     1861 tttccaaatg attgaaacaa agaaggaatt tacaaaagaa aatgttatta ctctttcctg
     1921 gcaatgctgt actttcttta aaatgactca aagccgacag ttcgtgtgat acaactgaac
     1981 attaactgac actaaataca tcatgcaact tcttttaaat attttaatta aaatcatagc
     2041 tattgagcaa gagaaggcta taaatatgtg gtattgatca tattgaggcc actgtggcta
     2101 gcacaatttt taaaaaattt taggacagaa gattttttcc taaaatgttc tctgttctcc
     2161 aacttcaagt tgaatggtag aagctaagcc ttatacatgc ctgggacagc ctccactaca
     2221 aagaaacttc tgaaccaaaa tagcagaggt ggaaaagccc tggtcaaaag ttaggaagat
     2281 atcttaagta tgttaaaaaa caaaactaac ctaatccaaa gagcaaggta gggggtagta
     2341 tccttcatgc atctgcaagt gagaataatc agcaatgaag agaacaagaa gaggtctggg
     2401 aaatcaaaag tggagaagcc taaataccat ggagaagtgc aaagaagtac aaagcaattg
     2461 gcaatttagt tccttgctcc ccaagccacg gaggaaggga gaactaaaga ctataagcga
     2521 ataagaataa ggcaggccag agagtgccag catagtccta actgcaggaa agaaacccat
     2581 gtttcttagc agctttaagt ctatccatgg gattagcctg aaactgtccc ccagacaacc
     2641 cagctttgga gaagaaattc atgtcccagc aaaagctcag agtaatatgc agtcttgaga
     2701 agtgccgatc aggagtacct catcattcag aactgctctg aggatcagaa aataatgagc
     2761 aatcacaaat catggtccct acagaggacc ttgctgccct gacagggtgg gagaaggtcc
     2821 ctgaggacaa atacagataa gaaggaatat ctctcacaaa tccaatggag tatactggct
     2881 tcgggaagga gggaaataag ggacgtggtt atcaatgttc cttttgtcac aagaatcaag
     2941 actggtcaca tggttttaca caggggagga atgggcagag ggagcctagg agtctgagag
     3001 cataagacca gaattggcaa agagtttgac tcccatcaac tgtcctccgt caaagaagtt
     3061 ggtttgatta cttccttcac tctgaggcat tccaggtata taccacattt gtgtaatgcc
     3121 acagactgaa gaccgctgga atgagtgcca tgtctgctac acataccaat aaacgttctg
     3181 tacagtgaga caa
//
