LOCUS       NM_001309374             549 bp    mRNA    linear   ROD 18-AUG-2023
DEFINITION  Mus musculus KRAB box domain containing 5 (Krbox5), transcript
            variant 2, mRNA.
ACCESSION   NM_001309374
VERSION     NM_001309374.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Krebs CJ, Larkins LK, Khan SM and Robins DM.
  TITLE     Expansion and diversification of KRAB zinc-finger genes within a
            cluster including Regulator of sex-limitation 1 and 2
  JOURNAL   Genomics 85 (6), 752-761 (2005)
   PUBMED   15885501
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Krebs CJ, Larkins LK, Price R, Tullis KM, Miller RD and Robins DM.
  TITLE     Regulator of sex-limitation (Rsl) encodes a pair of KRAB
            zinc-finger genes that control sexually dimorphic liver gene
            expression
  JOURNAL   Genes Dev 17 (21), 2664-2674 (2003)
   PUBMED   14563677
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CT030194.5 and CT030655.7.
            
            Transcript Variant: This variant (2) differs in the 5' UTR compared
            to variant 1. Variants 1 and 2 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.652504.1,
                                           SRR17784645.158523.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849382
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-48                CT030194.5         194400-194447
            49-175              CT030655.7         3029-3155
            176-252             CT030655.7         3592-3668
            253-549             CT030655.7         12793-13089
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="13"
                     /map="13 34.82 cM"
     gene            1..549
                     /gene="Krbox5"
                     /gene_synonym="EG328280; Gm10037; Rslcan24"
                     /note="KRAB box domain containing 5"
                     /db_xref="GeneID:102637366"
                     /db_xref="MGI:MGI:3645096"
     exon            1..48
                     /gene="Krbox5"
                     /gene_synonym="EG328280; Gm10037; Rslcan24"
                     /inference="alignment:Splign:2.1.0"
     exon            49..175
                     /gene="Krbox5"
                     /gene_synonym="EG328280; Gm10037; Rslcan24"
                     /inference="alignment:Splign:2.1.0"
     CDS             52..327
                     /gene="Krbox5"
                     /gene_synonym="EG328280; Gm10037; Rslcan24"
                     /note="regulator of sex-limitation candidate 24"
                     /codon_start=1
                     /product="uncharacterized protein LOC102637366"
                     /protein_id="NP_001296303.1"
                     /db_xref="CCDS:CCDS88477.1"
                     /db_xref="GeneID:102637366"
                     /db_xref="MGI:MGI:3645096"
                     /translation="MLSFRDVAIDFSAEEWECLEPAQWHLYRDVMLENYSHLVFLELA
                     DSKPQLVTFLEQRQQSTGVKRQEVLQTPCRELWGRNPQCHYSQNWNA"
     exon            176..252
                     /gene="Krbox5"
                     /gene_synonym="EG328280; Gm10037; Rslcan24"
                     /inference="alignment:Splign:2.1.0"
     exon            253..549
                     /gene="Krbox5"
                     /gene_synonym="EG328280; Gm10037; Rslcan24"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcgagagtcc tgtgtggccg ttacattcct gtcgtctgtg atgtggagga aatgctatca
       61 tttagggatg tggccattga tttctctgca gaggagtggg aatgcctgga gcctgctcag
      121 tggcatctgt acagggatgt gatgctggag aattacagcc accttgtgtt cctggagctt
      181 gctgactcta agccacagct ggtgacattt ctggagcaaa gacaacagtc tactggtgtg
      241 aagagacaag aggttcttca gactccttgc agggaattgt ggggaaggaa tccgcagtgt
      301 cactacagcc agaactggaa tgcctgatgg tatacagaga agcaaaactg gcctggacac
      361 agtctcataa ctgtgtggtt agagctgttg tatcaactct actgtgccca agaaagaagt
      421 ccaggtgcta aagaccttgc caactgtggg ctttgcttta tctccagcta gctgagtgaa
      481 caagaggtga gattacagtg ggctgccagt aggaaggagt gagcattaaa ctctgtggta
      541 ttgcttcgg
//
