LOCUS       XM_011248090            6124 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus lysine demethylase 5B (Kdm5b), transcript
            variant X1, mRNA.
ACCESSION   XM_011248090
VERSION     XM_011248090.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000067.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011248090.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6124
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="1"
     gene            1..6124
                     /gene="Kdm5b"
                     /gene_synonym="2010009J12Rik; 2210016I17Rik; D1Ertd202e;
                     Jarid1b; mKIAA4034; PLU-1; Plu1; PUT1; Rb-Bp2; RBBP2H1A"
                     /note="lysine demethylase 5B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     mRNAs, 160 ESTs, 1415 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:75605"
                     /db_xref="MGI:MGI:1922855"
     CDS             455..4615
                     /gene="Kdm5b"
                     /gene_synonym="2010009J12Rik; 2210016I17Rik; D1Ertd202e;
                     Jarid1b; mKIAA4034; PLU-1; Plu1; PUT1; Rb-Bp2; RBBP2H1A"
                     /codon_start=1
                     /product="lysine-specific demethylase 5B isoform X1"
                     /protein_id="XP_011246392.1"
                     /db_xref="GeneID:75605"
                     /db_xref="MGI:MGI:1922855"
                     /translation="MGFAPGKAVGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTSD
                     TKDKEYKPHDIPQRQSVQPAETCPPARRAKRMRAEAMNIKIEPEEATEARTHNLRRRM
                     GCTTPKWENEKEMKSTIKQEPTEKKDCELESEKEKPKSRAKKTATAVDLYVCLLCGSG
                     NDEDRLLLCDGCDDSYHTFCLVPPLHDVPKGDWRCPKCLAQECNKPQEAFGFEQAARD
                     YTLRTFGEMADAFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEF
                     GSGFPVRDGKIKISPEEEEYLDSGWNLNNMPVMEQSVLAHITADICGMKLPWLYVGMC
                     FSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLENVMKKLAPELFVSQPDLLH
                     QLVTIMNPNTLMTHEVPVYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWL
                     PLGRQCVEHYRLLHRYCVFSHDEMICKMASKADVLDVVVASTVQKDMAIMIEDEKALR
                     ETVRKLGVIDSERMDFELLPDDERQCIKCKTTCFMSAISCSCKPGLLVCLHHVKELCS
                     CPPYKYNLRYRYTLDDLYPMMNALKLRAESYNEWALNVNEALEAKINKKKSLVSFKAL
                     IEESEMKKFPDNDLLRHLRLVTQDAEKCASVAQQLLNGKRQTRYRSGGGKSQNQLTVN
                     ELRQFVTQLYALPCVLSQTPLLKDLLNRVEDFQQQSQKLLSEEMPSAAELQELLDVSF
                     EFDVELPQLTEMRIRLEQARWLEEVQQACLDSSSLSLDDMRRLIDLGVGLAPYSAVEK
                     AMARLQELLTVSEHWDDKAKSLLRARPRHSLSSLATAVKEMEEIPAYLPNGTVLKDSV
                     QRARDWVQDVDALQAGGRVPVLETLIELVARGRSIPVHLNSLPRLEMLVAEVHAWKEC
                     AAKTFLPENSTYSLLEVLCPRCDIGLLGLKRKQRKLKEPLPSGKKRSTKLESLSDLER
                     ALMESKETAAAMATLGEARLREMEALQSLRFANEEKLLSPVQDLEMKVCLCQKTPATP
                     MIQCELCRDAFHTSCVAAPSISQSSRIWLCPHCRRSEKPPLEKILPLLASLQRIRVRL
                     PEGDALRYMIERTVNWQHRAQQLLSSGNLKLVQDQVGSGLLSSRWPASAGQASATDKV
                     SQPPGTTSFSLPDDWDNRTSYLHSPFSTGQSCLPLHGLSPEVNELLMEAQLLQVSLPE
                     IQELYQTLLTKPSSVQQADRSSPVRSSSEKNDCLRGKRDAINSPERKLKRRPEREGLP
                     SERWDRVKHMRTPQKKKIKLSHPKDMDSFKLERERSYDLVRNAETHSLPSDTSYSEQE
                     DSEDEDAICPAVSCLQPEGDEVDWVQCDGSCNQWFHQVCVGVSPEMAEKEDYICVRCT
                     GKDAPSRK"
ORIGIN      
        1 ttgacaaagt tattagaaac caaaatctaa gaggagttag gatcctgtga gttgccctcc
       61 atgttggcat tgtggcgcac taggactggc aaggtagctg atgaaatgat gagtcaagac
      121 tgtatgcaaa ccaagtttaa gacagtagcc agaagagtga ggagagctag acgtactttc
      181 cgaggattgg cagccaccat tcgcttgtga tgtcgataaa cttcatttca ccccgcggat
      241 ccagaggctg aatgagctgg aggcccaaac acgtgtaaaa ttgaatttcc tggaccagat
      301 tgcaaagtat tgggagctac aaggaagtac tctgaagatt ccccacgtgg agagaaagat
      361 cttagacttg ttccagctaa ataagttagt cgcagaagaa ggtgggtttg cagttgtttg
      421 caaggataga aaatggacca aaattgccac caagatgggt tttgctcctg gtaaagctgt
      481 gggctcacat atcaggggac attatgagcg aatactcaat ccatacaatt tgttcctgtc
      541 tggagacagt ctgaggtgtc ttcagaagcc taacctgacc tccgacacaa aggacaagga
      601 gtacaaaccc catgatattc cccagaggca gtctgtgcag cccgcagaaa cctgtcctcc
      661 ggcccgccga gcaaagcgca tgagagcaga ggctatgaat attaaaattg agccagaaga
      721 ggcaacagaa gccaggactc ataatctgag acgccgaatg ggttgcacaa ctccaaaatg
      781 ggaaaatgag aaagaaatga aaagcaccat caagcaagag cccactgaga agaaagactg
      841 cgagttagaa agtgagaagg agaagcccaa gagccgggcc aagaaaacgg ccactgcggt
      901 ggacctgtat gtgtgcctct tatgtggaag tggcaatgac gaggaccgac tcctactgtg
      961 tgacggctgt gatgacagtt accacacctt ctgcctggtt ccccctctcc atgacgttcc
     1021 caagggagac tggaggtgtc ctaagtgttt ggctcaagaa tgtaataagc cacaagaagc
     1081 ttttggtttt gaacaagcag caagggacta tacacttcgt acatttggag aaatggcaga
     1141 tgcattcaaa tctgattact tcaacatgcc agtccatatg gttcccacag agctggtgga
     1201 gaaggagttt tggcggctcg taagcactat tgaagaagac gtcacggtgg agtatggagc
     1261 tgatattgct tcaaaagagt ttggcagtgg ctttcctgtt cgagatggga aaatcaagat
     1321 ttctcctgag gaagaggaat acctggatag tggctggaat ttgaacaaca tgccagtgat
     1381 ggagcagtct gtccttgctc atattactgc tgatatatgt ggcatgaaac tcccctggtt
     1441 gtatgtgggc atgtgctttt cttcattctg ttggcacatt gaagaccact ggagctattc
     1501 aatcaactac ctacactggg gtgagccaaa aacctggtat ggagttccag gctacgctgc
     1561 tgagcagcta gaaaacgtga tgaagaagct cgctcctgag ctctttgtgt cccagccgga
     1621 cctgctccac cagctggtga ccatcatgaa ccccaacact ctgatgactc atgaagtgcc
     1681 tgtttatcga acgaatcagt gtgctgggga gtttgtaatt acgtttccaa gagcctacca
     1741 cagtggcttc aaccaaggtt ttaattttgc cgaggctgtt aacttctgca ctgttgattg
     1801 gctgccattg ggccgccagt gtgtggagca ttatcgcttg ctgcaccgtt attgtgtctt
     1861 ttcccacgat gaaatgatat gcaaaatggc ttctaaggct gatgtattag acgttgtggt
     1921 agcgtcaact gttcagaagg acatggccat catgatcgag gacgagaaag ctttaaggga
     1981 aactgttcgg aaattgggag taattgattc tgaaagaatg gattttgagc tgttgccaga
     2041 tgatgagcgg cagtgtataa aatgcaaaac tacatgcttc atgtctgcca tctcctgctc
     2101 ttgtaaacct ggcctacttg tttgcctaca tcatgtgaaa gaattgtgtt cttgcccccc
     2161 gtataagtat aacctgcggt atagatacac tctggatgat ctctatccaa tgatgaatgc
     2221 attaaagctt cgagcagagt cttacaatga atgggcctta aatgtgaatg aagccttgga
     2281 agcaaagatc aataagaaga aaagtcttgt cagctttaaa gctttgattg aagaatcaga
     2341 aatgaaaaaa ttcccagaca atgatctttt gcgtcacctt cgactagtca cgcaggatgc
     2401 agaaaagtgt gcctctgttg cccagcagtt gcttaatggc aaaaggcaaa caaggtatcg
     2461 atctggtgga ggaaagtctc agaatcagct gacggtgaat gaacttagac agtttgtgac
     2521 tcagctgtat gctctgccgt gcgtccttag tcagacaccg ttgctaaagg atctcttgaa
     2581 tcgtgtggaa gatttccaac agcaaagcca aaaactactg tctgaggaaa tgcctagcgc
     2641 tgccgagcta caggagttgc tggatgtcag ctttgaattt gatgttgagc ttccacagct
     2701 cactgagatg cgcattcgct tagagcaggc ccgctggctg gaagaggttc agcaggcttg
     2761 cctggactcc agctcccttt ctttggatga tatgagacga ctcatagact taggggtggg
     2821 gctggctcca tattctgctg tggagaaagc tatggcccgc ctgcaggagc tgctaacagt
     2881 gtcagaacac tgggacgaca aagccaagag tctcctcaga gcaagaccac ggcattcttt
     2941 gagtagcctt gctacagcag tcaaagagat ggaggagatc cccgcctacc tgcccaatgg
     3001 tacagtcctg aaggattctg tgcaaagagc cagagactgg gttcaggatg tggatgcatt
     3061 gcaggcagga ggacgtgtgc cagtgttaga gacactcatt gaacttgttg caagaggccg
     3121 atctatccca gtacatctca attctttacc aagattggaa atgttagtag ctgaagttca
     3181 tgcatggaaa gaatgtgctg ctaaaacatt cttgcctgag aattctacat attctctgtt
     3241 agaggttctt tgccctcggt gtgacattgg ccttttgggg ctgaaaagga aacagagaaa
     3301 gttgaaggag cccttgccga gtggaaagaa gagaagcacc aagttagaga gcctgagcga
     3361 tctggagagg gctctgatgg agagcaaaga gactgcggca gctatggcaa ctcttgggga
     3421 agctcgccta cgagagatgg aagctttgca gtctctcaga tttgccaatg aagagaaatt
     3481 gctgtcacct gtccaagact tagagatgaa agtctgcttg tgtcagaaga ctccagccac
     3541 tcccatgatt cagtgtgaac tctgcaggga tgctttccat actagttgtg tggcagcacc
     3601 cagtatttca caaagctccc gaatctggct ttgtcctcac tgtcggaggt cagagaagcc
     3661 tccattagag aaaattctgc ctctgctggc ctccctacag cgtatacgag ttcgtcttcc
     3721 tgaaggagat gcactccgat acatgattga aagaaccgtg aactggcaac atagagccca
     3781 gcagctgctt tcttcaggga atctaaaact tgtgcaagac caagtgggtt ctggactgtt
     3841 gtctagcaga tggccagcct cagcaggaca ggcatcagca acagacaagg tgtctcagcc
     3901 tcctggcaca acatcctttt cattgcccga tgactgggac aacagaacct catatttaca
     3961 ctctcccttc tctactggac agagttgtct ccccctccat ggtttgagtc cagaagtgaa
     4021 tgaattgctg atggaagccc agctgctcca ggtatccctt cctgaaattc aggagcttta
     4081 tcagactcta cttactaagc caagctctgt tcagcaagct gaccgaagtt caccagttag
     4141 atccagcagt gagaagaacg attgccttcg agggaaacga gatgcaatca acagtcctga
     4201 gaggaaactg aaaaggcgcc cagaaagaga aggccttcct agcgagcggt gggatcgagt
     4261 taaacacatg cggacccccc aaaagaagaa aatcaaactg agtcacccca aggacatgga
     4321 cagtttcaag ttagaaagag agcgtagcta tgacttagtg cgtaatgctg aaactcattc
     4381 cctgccctca gacacatcct actccgaaca ggaggactct gaggatgaag atgccatctg
     4441 tccagctgtg agctgcctgc agccagaagg agatgaggtg gactgggtcc agtgtgatgg
     4501 cagctgcaat cagtggtttc accaggtctg tgttggtgtc tctccagaga tggcagagaa
     4561 ggaagactac atctgtgtgc gctgtactgg gaaggacgca ccaagccgaa agtaaaaaca
     4621 aaacacacac tcacttcatg taattcagga ctccaataaa gaagatttcc tcaatctcag
     4681 caaagctaca ggactggggt cgagccagcc tgtacacggt gctatttcta ttccttatgg
     4741 gatcattttt ccagaactct ttgaaaaaaa gaaaaaacaa ctaaaaaaat tttgacactt
     4801 ttttgtaatt tttttcctta aaagctgttt gtggttgttg aagtttaaaa tgctgactgt
     4861 tttttgcagg ggtctctact gattacgaag gtattggagt ttgcaccttt ttgtgtacag
     4921 caaaacattg tacttctgcc tgggatatgc cggcttaaga gtccaactca gtttcagagc
     4981 ccagcagggg caccagaatt ccagtaaccc tcacagagca gccgcgctcc tttgtctgtc
     5041 accacattgg ggggatttta agtttttact ttggggtttt tgttcctttc tttctcccct
     5101 tttcctttct ggtaggctag gtttatttat ctcagcaata acttctatgt tggtttcagt
     5161 ggctggaatt aaaacaaaac aaacttctaa acagtgtgtt ggtgctttag catttggctc
     5221 atgtacagaa agcaaatgtc tagtttctgg tgtcactgca ctagtgattt aggaagagac
     5281 tgcgctgtaa gtaatcgccc gccacggctg tattttggct ttctccctac tcagtccccc
     5341 acccccaccc tttttttttt tttttttttt tggtagaatg tatcaaatgt tgcagtttat
     5401 attgtggaat aataaatcct tggtcctatt ctaacactag actacagctt cttctgccct
     5461 tccacctcgt gggcctgcag aaccagaagg gttgcttgct tctgcttctt cccaggcagg
     5521 cagccgcaga agtgtgtttg ctctaggaga ctctgtagcc ttattctctg ggtgggcctg
     5581 tgccttcatg ccccactaat aaagaatccc tgtctttaaa gaccagagcc agtcctttaa
     5641 gccatgttct ttttcagtaa gccctcagaa tattggagtg gtccccaaat cactccagac
     5701 tgtaagacag ctctcctatg gaatgctttt attgtcattg aattgacagg gaagtttggt
     5761 tgagatgtgg tccatcatct tagaggctca gatctgttgt atcagttgag ggggaccttg
     5821 ggcctgcctg ggatttctct gccatctatg taatttcatc agtctctctg gttgtggaca
     5881 gccgatacca gtttcccctg atctgcagag aggaagactt ccagtgagca gaacaggctc
     5941 ttgctcactt ttctcctaag ttgttgcaag ctcttgtttt cctcactgtc tgtagccata
     6001 agcctgatgg tgggcagagt tagcagacct ttaataaaac atcaaaaagc agtttgtgaa
     6061 atagcgaaaa tttaaatgta ctgtccccta tgcaatccag gtaattaaat ctgtttaaga
     6121 ataa
//
