LOCUS       XM_006538352            4333 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus lysine (K)-specific demethylase 4C (Kdm4c),
            transcript variant X2, mRNA.
ACCESSION   XM_006538352
VERSION     XM_006538352.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000070.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006538352.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4333
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="4"
     gene            1..4333
                     /gene="Kdm4c"
                     /gene_synonym="2410141F18Rik; Gasc1; Jmjd2c"
                     /note="lysine (K)-specific demethylase 4C; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 27 ESTs, 530 long SRA reads, 31 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 13 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:76804"
                     /db_xref="MGI:MGI:1924054"
     CDS             302..3466
                     /gene="Kdm4c"
                     /gene_synonym="2410141F18Rik; Gasc1; Jmjd2c"
                     /codon_start=1
                     /product="lysine-specific demethylase 4C isoform X2"
                     /protein_id="XP_006538415.1"
                     /db_xref="GeneID:76804"
                     /db_xref="MGI:MGI:1924054"
                     /translation="MEVVEVESPLNPSCKIMTFRPSMEEFREFNKYLAYMESKGAHRA
                     GLAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMVTGQSGLFTQYNIQKKAMTVKEFRQL
                     ANSSKYCTPRYLDYEDLERKYWKNLTFVAPIYGADINGSIYDEGVDEWNIARLNTVLD
                     VVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHG
                     KRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYG
                     YHAGFNHGFNCAESTNFATVRWIDYGKVAKLCTCRNDMVKISMDIFVKKFQPDRYQIW
                     KQGKDIYTIDHTKPTPESTPEVKTWLQRKKKLRKPPKSLQGNKPLCKRPKPEEDEEFA
                     EFSGEEGANPAMGPRHLKVTEKPEKALKLGKLEESSAKEALDTRIQVDQSLLNDTKLS
                     GKGCISSSVTAEIPPEDNRASAVISPSQLKEGADCIPLSHGHQAGKESHLLKILKLES
                     PKIPSPLPESNKVLTEGEENDEEGHGSNLEPGEIPEALSEERNGLNIPKIIEGQPKTT
                     KSWRHPLGKPPARSPMTLVKQQVASDEELPEVLSIDEEVEETESWAKPLIHLWQTKSP
                     NFMAEQEYNATVAKMEPNCAICTLLMPYYKPDSSKEENDSRWETAVNEVVQSGRKTKP
                     IIPEMCFIYSEENVDYSPPNAFLEEDGTSLLISCAKCFVRVHASCYGVPSHEVCDGWL
                     CARCKRNAWTAECCLCNLRGGALKQTKNNQWAHVICAVAVPEVRFTNVPERTQIDVDR
                     IPLQRLKLKCIFCRHRVKKVSGACIQCSYGRCPASFHVTCAHAAGVLMEPDDWPYVVN
                     ITCFRHRVNSNAKSKTCEKAISVGQTVITKHRNTRYYSCRVIDVTSQTFYEVMFDDGS
                     FSRDTFPEDIVSRNCVKLGPPAEGEVIQVKWPDGKLYGAKYLGSNVAYMYQVEFEDGS
                     QIAMKREDIYTLDEELPKRVKARFSTASDMRFEDTFYGADVIQGERKRQRVLSSRLKN
                     EYVDDPVYRTFLKSSFQKKCQKRQ"
ORIGIN      
        1 tcggtccggt cttcgcaggg cagcacgggc ctgggcgctc cgcggtgcaa agcagtcagc
       61 tgggagggag gaggcggccc tgacagtcca ttctggccct cgggattcgg gagctcgctc
      121 gcctgcctcc cgggagccga tcggaggtgc tgttgctccg gactgccacg cctgtgtggt
      181 ctggggcgcc gaccgacccc tctgcggccg actccaggaa ggccgggcct gtgcgtcctc
      241 cgagcctccc ttgggtcggg atgtccggat ccgcgaggta gcagaaacat ctgtggccat
      301 catggaggtg gtggaggtgg agagtcccct aaatcccagc tgtaagataa tgaccttcag
      361 accttccatg gaggagtttc gggagttcaa caaatacctc gcatacatgg aatccaaagg
      421 agcccatcga gcaggtcttg ccaaggtgat tcctcctaag gagtggaagc caagacagtg
      481 ctatgatgat attgataatt tgctcatccc agcaccaatt cagcagatgg tcacagggca
      541 gtcgggactg ttcacgcaat acaacatcca gaagaaagcc atgactgtga aggagttcag
      601 gcagctggct aacagcagca aatactgtac tccaagatac ttggattatg aagatttgga
      661 acgcaaatac tggaaaaact taacttttgt ggcacctatt tatggagcag atataaatgg
      721 gagcatttat gatgagggtg tggatgaatg gaatatagct cgcctaaata cagtcttgga
      781 tgtggttgaa gaagagtgtg gtatttctat tgagggggta aatacccctt atctctattt
      841 tggaatgtgg aaaacaacat ttgcgtggca cacggaggac atggatctct acagtattaa
      901 ttatctccac tttggggagc ccaagtcttg gtatgctata cctccggagc atggaaagcg
      961 acttgaaaga ctagcccaag gcttcttccc cagtagctcc caaggctgtg atgcatttct
     1021 ccggcacaag atgaccctca tttccccctc agtgctgaag aagtatggca ttcccttcga
     1081 caagatcacc caggaggctg gagagtttat gatcactttt ccttatggat atcatgctgg
     1141 ttttaatcat ggtttcaatt gtgctgagtc tacaaatttt gctacagtca gatggattga
     1201 ctacggcaag gttgctaagt tgtgcacttg tcggaatgac atggtgaaga tatcaatgga
     1261 tatatttgtg aagaaatttc agccagatag ataccagatt tggaaacaag gaaaggatat
     1321 atatactatt gaccatacaa agcccactcc agaatctact ccagaagtaa aaacatggct
     1381 acagaggaag aaaaaattaa gaaagcctcc caagagctta cagggcaata agccactttg
     1441 taaaaggcct aaacctgaag aagatgagga atttgctgaa tttagtgggg aagagggtgc
     1501 aaaccctgcc atgggcccta ggcacctcaa agtcactgaa aagccagaaa aagcattaaa
     1561 gctggggaaa ttagaagaat cttcagcaaa agaagctttg gataccagga tacaagtgga
     1621 tcaaagctta ctgaacgaca ccaagctctc gggaaaaggt tgcataagtt catcagtaac
     1681 agctgaaatt ccaccagaag acaacagagc cagtgctgta atttcaccat ctcagctgaa
     1741 ggagggcgct gactgcatac cactttctca tggccatcaa gcaggcaaag agtcacatct
     1801 acttaagatt ctaaagcttg aatctcccaa gataccttcc cccctgccag aaagtaataa
     1861 agtattgaca gagggagaag aaaatgatga agagggccat ggaagtaacc ttgagcctgg
     1921 ggaaatccca gaagctctta gtgaagagag aaatgggctc aacattccta agataattga
     1981 aggacagcca aaaactacta agagttggcg ccatccactt ggtaagcctc cggccagatc
     2041 cccaatgaca cttgtgaagc agcaggtagc gagtgatgaa gaattgcctg aggttctaag
     2101 cattgacgaa gaagttgaag aaacagagtc ttgggcaaag cctctcatcc acctttggca
     2161 gacaaagtct cctaacttta tggctgaaca ggagtacaat gcaactgttg caaaaatgga
     2221 gccaaactgt gccatctgca ctctgctcat gccgtactac aagcctgata gcagcaaaga
     2281 agaaaatgat tctagatggg agacagcagt aaatgaagtg gttcaatctg gaagaaagac
     2341 taagcccatt attccagaga tgtgttttat ttatagtgaa gaaaatgtag actattcccc
     2401 cccaaatgcc ttccttgaag aagatggaac aagtcttctg atttcctgtg ccaagtgctt
     2461 cgtgcgggtt catgcaagtt gttatggtgt cccttctcat gaagtctgtg atggatggct
     2521 gtgtgcccgg tgcaagagaa atgcatggac tgcagaatgc tgtctctgca atttgagggg
     2581 aggtgctctg aaacagacta agaacaatca gtgggctcat gtcatatgtg ctgttgcagt
     2641 tccagaagtg cgattcacta atgtcccaga acggacacaa atagatgtag acagaatacc
     2701 tttacagagg ttaaaattga aatgcatctt ctgtagacac cgggttaaaa aggtttctgg
     2761 agcctgcatc cagtgttctt atggccgctg cccagcttca ttccatgtta cgtgtgccca
     2821 tgctgctgga gtgctcatgg agcctgatga ctggccttac gtggtaaaca tcacatgctt
     2881 cagacataga gtcaactcaa acgcgaaatc caaaacttgt gagaaagcca tttctgtggg
     2941 tcagacagtc atcacaaaac atcgaaacac tcggtactac agctgcagag tgatagatgt
     3001 gacatctcaa accttctatg aggtcatgtt tgatgatggc tccttcagca gagacacatt
     3061 tcctgaagat attgtgagcc gaaactgtgt gaagctgggc cctcctgcgg agggagaagt
     3121 catccaagtc aaatggcctg atggtaaact ctatggggca aagtatcttg gatcaaatgt
     3181 tgcctatatg tatcaggttg aatttgaaga tggatcgcag attgcaatga agagagaaga
     3241 catatacact ttagatgaag agttacccaa gagagtaaag gctcgttttt ccacagcctc
     3301 cgacatgcga tttgaagaca cattttatgg agcagatgta atccaagggg agaggaagag
     3361 gcaaagagtg ctaagctcca ggctcaagaa tgagtatgtg gatgaccctg tgtatcgtac
     3421 tttcctgaag agttctttcc agaagaagtg tcagaagaga cagtagttga taatgtgcag
     3481 cagccacagt gcagctcaga ccagaagagg gaagacaaag ggacagcctt ggggtacaca
     3541 ttgggacagg tggctgggtg cttctttggt attggtaata aaccaggctt ctggagtttg
     3601 attaccaagc aaccaagaag agacatatta gttgcttctg taatctgatc acccctcagt
     3661 catttgtttg accccaaaga atattcctaa attaaaggaa acagcagtga atggcccact
     3721 agataaaaca actgctaaag aagcggggtt ccctctctgg ctcaggtccc ttcctcaggg
     3781 aacacatttg gaggctcctt tcccacctcc ttcagtggca gcctcatcac ccaacagccg
     3841 gtgggtgtat ttatatatat tttccacagc cagggaaaga gtctcactca catttgtttt
     3901 cagtggcagt ttttataaaa catttttaaa acacaaatgg catgtatggt aataggattt
     3961 acctgtatgc tatcttccct tgtacagaac ttttccattt tttatattat tacttttgat
     4021 tgtgtctgaa aactgagttg gcctttataa gaggaaattt tttgctcttg aagaggaatt
     4081 catatgaagt atatgggaat tttatatatt tacagaggaa aaatcttggc ctgatatttt
     4141 gaacacttca taattcctgt tctgaaatga tatttataaa atatatattt ctttcattat
     4201 gtgtttgtaa aaattagagt ttaaagaaat atacttaatg catagtttta aactaatgta
     4261 acatgatttt tctttgcaaa acagcctgga gatgtattaa tatttaaaaa ttaaaatctg
     4321 ttttctcctg tcc
//
