LOCUS       NM_025841               1870 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
            retention receptor 2 (Kdelr2), mRNA.
ACCESSION   NM_025841
VERSION     NM_025841.4
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1870)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1870)
  AUTHORS   Rezvani,K., Teng,Y., Pan,Y., Dani,J.A., Lindstrom,J., Garcia
            Gras,E.A., McIntosh,J.M. and De Biasi,M.
  TITLE     UBXD4, a UBX-containing protein, regulates the cell surface number
            and stability of alpha3-containing nicotinic acetylcholine
            receptors
  JOURNAL   J Neurosci 29 (21), 6883-6896 (2009)
   PUBMED   19474315
REFERENCE   3  (bases 1 to 1870)
  AUTHORS   Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
            Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
            Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CJ173962.1, AK150402.1 and AA823141.1.
            
            On May 7, 2009 this sequence version replaced NM_025841.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC007146.1, AK150402.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-347               CJ173962.1         46-392
            348-1846            AK150402.1         343-1841
            1847-1870           AA823141.1         15-38               c
FEATURES             Location/Qualifiers
     source          1..1870
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="5"
                     /map="5 82.12 cM"
     gene            1..1870
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /note="KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum
                     protein retention receptor 2"
                     /db_xref="GeneID:66913"
                     /db_xref="MGI:MGI:1914163"
     exon            1..233
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..781
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /note="KDEL receptor 2; KDEL endoplasmic reticulum protein
                     retention receptor 2"
                     /codon_start=1
                     /product="ER lumen protein-retaining receptor 2"
                     /protein_id="NP_080117.1"
                     /db_xref="CCDS:CCDS39369.1"
                     /db_xref="GeneID:66913"
                     /db_xref="MGI:MGI:1914163"
                     /translation="MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVF
                     TTRYLDLFTSFISLYNTSMKLIYIACSYATVYLIYMKFKATYDGNHDTFRVEFLVVPV
                     GGLSFLVNHDFSPLEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRA
                     LYLVNWIWRFYFEGFFDLIAVVAGVVQTILYCDFFYLYITKVLKGKKLSLPA"
     exon            234..334
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            335..493
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            494..746
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            747..1850
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1089..1094
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /note="hexamer: AATAAG"
     polyA_site      1120
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /note="major polyA site"
     regulatory      1828..1833
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /note="hexamer: AATAAA"
     polyA_site      1850
                     /gene="Kdelr2"
                     /gene_synonym="1110007A14Rik"
                     /note="major polyA site"
ORIGIN      
        1 gacggcagtt cggccacgtc cctggccacg tcgcgcccgc tcccgccatc tttcgccgct
       61 tcctctctcc ggggctgctg tcgccgcgtc ccgagtcgct gcctagctcc ggtgccgctg
      121 tgccgcgccg accgccgccg ccatgaacat cttccggctg actggggacc tgtcccacct
      181 ggcggccatc gtcatcctac tgctgaagat ctggaagacg cgctcctgtg ctgggatctc
      241 tgggaagagt cagctcctgt tcgcactggt cttcacgact cgctacctgg accttttcac
      301 ttccttcatt tccttataca acacgtctat gaagcttatc tacattgcct gctcctatgc
      361 cacggtgtac ctgatctaca tgaaatttaa ggccacctat gatggaaatc acgatacctt
      421 ccgagtggag ttcctggtgg ttcctgtagg aggcctctca tttctagtca atcatgactt
      481 ctctcctctt gagatcttat ggaccttctc catctacctg gagtccgtgg ccatccttcc
      541 acagctcttt atgatcagca agactggcga ggctgagacc atcaccaccc actacctctt
      601 cttcctgggc ctctaccgcg ctctgtacct ggtcaactgg atctggcgct tctacttcga
      661 gggcttcttt gatctcattg ctgtggtggc tggtgtcgtc cagaccattc tctactgcga
      721 cttcttctac ttgtacatta caaaagtact caaagggaag aagctcagcc tgccagccta
      781 agtgccaaag accagcagca gcctctgccc ttcggggtgc tcggacaggg tctcaccatg
      841 gcgaaggcga aggcgaaggc tcgggatgct cagtgggcag aagcagaggc ttctgcggca
      901 gccactcact ggtggctctt cgaggatgca gaggaagaga ccaggaggct tctgtctact
      961 gcatcctgcc ttatcttttt tattactatg tacaaagatt tttttacaca aagaaactta
     1021 atgctgtgtt aataaattca gtatgtagat gaattgggac agtttccaaa agtgacgatt
     1081 ttgtgcacaa taagtacaag ccttttttat tttttgagaa tttgttgagg tggtcaattc
     1141 tttgtgtcta caatgaaatt atactccttg acacttggta gattatccaa acatctgtca
     1201 aatttccatg ctatttattt tctttctttt ctttctttct tttttttttt tttttttttt
     1261 tttgccaaaa agataagttg tgtttgtttg aaatctgaga cattgtgttc cattggtgtt
     1321 tctgtccaaa agagtcctcg ttgtcctgga aacccttcct cagatgtcac actacatgtc
     1381 aggttcggga ggatgactag aaagtcctaa ggtttcatta ccaaaacttg aaggttccca
     1441 gcagaaactc agctgatgct caccaaacgc tcacccttcc cccgctgagg tgtggcagct
     1501 tgaggttatc cgagggtgct gagagctgcc acacccagag ggtctgagcc acctgccctc
     1561 tgactatgga gagggctggg ggtgatggct gttttggata gaggactcag ctcctctgag
     1621 gaatggaaca caaatagcca cctgtcactg tcagtccgaa ggatcactac aaccatgtta
     1681 gactcaaatg tttttctcat agcacttttg gtgataaaat gattgacaat ctttttaatt
     1741 ggcaacacca gttatcattc cttacattct ttttagtatt ttttttaaac tgggctcttg
     1801 catgacctat attgtgttaa catcctaaat aaacatttta ttaaacagaa aaaaaaaaaa
     1861 aaaaaaaaaa
//
