LOCUS       NM_001311116            2314 bp    mRNA    linear   ROD 06-AUG-2024
DEFINITION  Mus musculus kelch repeat and BTB (POZ) domain containing 4
            (Kbtbd4), transcript variant 1, mRNA.
ACCESSION   NM_001311116 XM_006500064
VERSION     NM_001311116.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Sousa-Nunes,R., Rana,A.A., Kettleborough,R., Brickman,J.M.,
            Clements,M., Forrest,A., Grimmond,S., Avner,P., Smith,J.C.,
            Dunwoodie,S.L. and Beddington,R.S.
  TITLE     Characterizing embryonic gene expression patterns in the mouse
            using nonredundant sequence-based selection
  JOURNAL   Genome Res 13 (12), 2609-2620 (2003)
   PUBMED   14613977
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Carninci,P., Waki,K., Shiraki,T., Konno,H., Shibata,K., Itoh,M.,
            Aizawa,K., Arakawa,T., Ishii,Y., Sasaki,D., Bono,H., Kondo,S.,
            Sugahara,Y., Saito,R., Osato,N., Fukuda,S., Sato,K., Watahiki,A.,
            Hirozane-Kishikawa,T., Nakamura,M., Shibata,Y., Yasunishi,A.,
            Kikuchi,N., Yoshiki,A., Kusakabe,M., Gustincich,S., Beisel,K.,
            Pavan,W., Aidinis,V., Nakagawara,A., Held,W.A., Iwata,H., Kono,T.,
            Nakauchi,H., Lyons,P., Wells,C., Hume,D.A., Fagiolini,M.,
            Hensch,T.K., Brinkmeier,M., Camper,S., Hirota,J., Mombaerts,P.,
            Muramatsu,M., Okazaki,Y., Kawai,J. and Hayashizaki,Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672241.6.
            
            On Jan 10, 2022 this sequence version replaced NM_001311116.1.
            
            Transcript Variant: This variant (1) encodes the longer isoform
            (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC025103.1, SRR11927937.5616061.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-44                AL672241.6         52822-52865
            45-662              AL672241.6         53719-54336
            663-769             AL672241.6         55598-55704
            770-2314            AL672241.6         57070-58614
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 50.44 cM"
     gene            1..2314
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /note="kelch repeat and BTB (POZ) domain containing 4"
                     /db_xref="GeneID:67136"
                     /db_xref="MGI:MGI:1914386"
     exon            1..44
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..1630
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /note="isoform 1 is encoded by transcript variant 1; kelch
                     repeat and BTB domain-containing protein 4"
                     /codon_start=1
                     /product="kelch repeat and BTB domain-containing protein 4
                     isoform 1"
                     /protein_id="NP_001298045.1"
                     /db_xref="CCDS:CCDS79820.1"
                     /db_xref="GeneID:67136"
                     /db_xref="MGI:MGI:1914386"
                     /translation="MKGGIADSWQREKLATMESPEEPGASMDENYFVNYTFKDRSHSG
                     RVAQGIMKLCLEEELFADVTISVEGREFQLHRLVLSAQSCFFRSMFTSNLKEAHNRVI
                     VLQDVSESVFQLLVDYIYHGTVKLRADELQEIYEVSDMYQLTSLFEECSRFLARTVQV
                     GNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQSTEEFLHLPHHLLTDIISDGVPCS
                     QNPTEAIEAWINFNKEEREAFAESLRTSLKEIGENVHIYLIGKESSRTHSLAVSLHCA
                     EDDSISVSGQNSLCHQITAACKHGGDLYVVGGSIPRRMWKCNNATVDWEWCAPLPRDR
                     LQHTLVSVPGKDAIYSLGGKTLQDTLSNAVIYYRVGDNVWTETTQLEVAVSGAAGANL
                     NGIIYLLGGEENDLDFFTKPSRLIQCFDTETDKCHVKPYVLPFAGRMHAAVHKDLVFI
                     VAEGDSLVCYNPLLDSFTRLCLPEAWSSAPSLWKIASCNGSIYVFRDRYKKGDANTYK
                     LDPATSAVTVTRGIKVLLTNLQFVLA"
     exon            45..662
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            663..769
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            770..2314
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      2295..2300
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /note="hexamer: AATAAA"
     polyA_site      2314
                     /gene="Kbtbd4"
                     /gene_synonym="2510026C23Rik"
                     /note="major polyA site"
ORIGIN      
        1 agaggttccg gatctgagcc ctggcatgaa aggaggtatc gcagatagtt ggcaaagaga
       61 gaagttggct accatggagt caccagagga gcctggagca tccatggatg aaaactactt
      121 tgtgaactat actttcaaag accggtctca ctcaggccga gtggctcagg gcatcatgaa
      181 actgtgttta gaggaggagc tctttgctga tgtcaccatt tcagtggaag gccgagagtt
      241 tcagctgcac cggctggtcc tgtcagctca gagctgcttc ttccgatcca tgttcacatc
      301 caacctgaag gaggctcaca accgggtgat tgtgctgcag gatgtcagcg agtctgtttt
      361 ccagctccta gttgactata tataccatgg gactgtgaaa cttcgagctg atgagctgca
      421 ggaaatttac gaggtgtcag acatgtatca gctgacatct ctctttgagg agtgttctcg
      481 gtttctggca cgcacggtac aggtgggcaa ctgcctgcag gtgatgtggc ttgcagatag
      541 acacagtgac cccgagctct acactgctgc caagcactgt gccaagaccc acctggccca
      601 gctgcagagc acagaggagt tcctccactt gccccaccat ctactcactg atatcatctc
      661 agatggggtt ccatgttccc agaacccaac agaggcaata gaagcttgga tcaatttcaa
      721 taaagaggaa agagaggctt ttgccgagtc actaaggact agcttgaagg aaattgggga
      781 gaatgtgcac atttacctga tcggaaaaga gtcatcccgc acgcactcat tggctgtgtc
      841 cttgcactgt gcagaagatg actccatcag tgtaagtggc caaaacagct tatgccacca
      901 aatcactgca gcctgcaagc atggtggcga cctgtatgtg gtaggagggt ccatcccacg
      961 acgcatgtgg aaatgtaaca atgccactgt tgactgggag tggtgtgctc ctttgccccg
     1021 cgaccgcctc cagcacaccc tagtatctgt gcctgggaaa gatgccatat attccctggg
     1081 cggcaagaca ctacaggata ccctctcgaa tgcagttatc tactatcggg taggtgataa
     1141 cgtgtggaca gagacaactc agttagaggt ggctgtgtct ggggctgctg gtgccaacct
     1201 gaatggaatc atctacttac tggggggtga ggagaatgat ctagacttct ttaccaaacc
     1261 ttcccgactg atccagtgct ttgacacaga aactgacaag tgccacgtga agccctacgt
     1321 actgcccttt gcaggccgca tgcacgcagc agtgcataag gatctggtgt ttattgtggc
     1381 tgagggggac tctctagtgt gctataatcc ccttctagac agcttcaccc ggctctgtct
     1441 tcctgaggcc tggagctctg ccccatccct ctggaagatt gccagctgta atggcagcat
     1501 ctacgtcttc agggatcgat ataagaaggg tgatgccaac acctataagc ttgaccctgc
     1561 cacttcagct gtaactgtca caagaggcat taaggtgctg cttaccaact tgcagtttgt
     1621 gttggcctaa aacagtgatg agaagaacag ctgactcctt tgccctcccc ttgtggtgta
     1681 tccccagtca aatcggtaat cccccagttc agagaaatgt gttagtttgg gcatatgtga
     1741 gaaaggcagc gcctcaaccc atccccaagg ctcatgggat gctctgtgta gggcttttca
     1801 cactgctgct gcttgaactc tgccattatc ccctgtgatc ctgtgcctca cttcagactg
     1861 cttagagcca gcctcttctc agacttaggc acagcctctc ttaccagatc agtgttaaaa
     1921 agaagcacct tggctcccat gcaggaagac agaggcccat tcctcttgtc tatagccagc
     1981 cgagtggcta cttgtcactt tccacaaaga attaagtatg agagttttgg atgggacagt
     2041 ggactaagct aaaaatgtac ttcaccagca agaatcaact gtaaaattca agatgttcct
     2101 tcaaatgttt tctcatctgt ctgtcaggaa aagaaacttt ggttggattt ttggcttata
     2161 caaacagata agccagaaag tagaaacaat tgtttctgat taatagcaga aactgttttc
     2221 cagactcaaa taaaaacagt ctctggtctt ttaaaggctc taagctaaat aaagagttag
     2281 gaactgttca tacaaataaa cgtttctgaa atga
//
