LOCUS       XM_011241771            6197 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus katanin interacting protein (Katnip),
            transcript variant X2, mRNA.
ACCESSION   XM_011241771
VERSION     XM_011241771.4
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_011241771.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6197
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..6197
                     /gene="Katnip"
                     /gene_synonym="D430042O09Rik; Kiaa0556"
                     /note="katanin interacting protein; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 33 ESTs, 206 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 5 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:233865"
                     /db_xref="MGI:MGI:2442760"
     CDS             50..4909
                     /gene="Katnip"
                     /gene_synonym="D430042O09Rik; Kiaa0556"
                     /codon_start=1
                     /product="katanin-interacting protein isoform X2"
                     /protein_id="XP_011240073.1"
                     /db_xref="GeneID:233865"
                     /db_xref="MGI:MGI:2442760"
                     /translation="MDERTSGQERWCMPLPQPSGHLCEDDLFYKGYSKDMVTDFDEKH
                     DEYLILLQQRNRILKHLKAKDPVQLRLEHLEQGFSVYVNGANSELKTSPRKAVHTDFS
                     RSASQAEGSQDYGRRTLFREAEEVLRRSSRTAPGKVQRRGWHQKSVQIRTEAGSRLHI
                     EPPLDCSEDFESQEDVIGKHEDATGEHTQELRKGLGLSTSLQTQEDGSSDEYDSIEED
                     VLSETETEDPVLPVHNRDECPLPSHDAVQKDVPKDQELEGRHPQATDTLVVMEFNPAS
                     KGNKMDRILSAKRKENAEVFIPSKPDSVLNPQPPAVFPEQERACSRSGSRRDRPLSAT
                     RKAYAAEDREEDASAVLKAIQVENEALQQVFLSHDPELHTSPQQDTKEPPAKSWSSLL
                     KAKEDIPELLPATPVTTDPELCRAAAGAKAVSQAMDGMSPLGSRQQHKLVGVLQTMES
                     DTTHLSQVAIPTEKPVPNSEEKWKARVDEIEDAIYVTMEILSNWGNASWVGLTEVQFF
                     DLNNIKLYVSPHDVDIRNAVLPGELGCLVNRDLVSKKDPPVWTCPFHPPLQLYFIIHN
                     MRQLRDFGLTMIKVRNYWTADGDLDIGAKNVKLYVNKSLIFDGVLEKGGGEAPSDCTI
                     PVDLQRERNESSDKALSTGWKESKGALKMAALSDARELGLSCSQPAESLDMTVSSQGD
                     FLGEKVNSTSGLKNSLSKLQEDVRLLATPASMGDGPSVPSSSSPGKCLPLEEEPSLIQ
                     QLESLRGRKIPEPTGKTPHWLQPSLAGMGKKQTVRKPKPLWLSPEKDLEQKSRFPSED
                     VMGDTPGEVETREKGPRREQGRTSSWNVITEERAPKAFSKACGDDLDIFSQLPNRDRP
                     ASGRRALKKEASSSHGDDRPASKEDTQASQTLPWLQWYGEQEHALHASWDSLTAFDRA
                     HRGRISALEPQGDILDEFLKQQRSSRHEEFPAPCREEEPEPSTEMGGDSDFKIPVLPY
                     GQHLVIDIKSTWGDRHYVGLNGIEIFSSSGEPVQISSITADPPDINILPAYGKDPRVV
                     SNLIDGVNRTQDDMHVWLAPFTPGMTHTISIEFTHPCQVALIRIWNYNKSRIHSFRGV
                     KDITMLLDTQCIFEGEIAKASGTLMGAPEHFGDTILFTMDEDILEAIFCLDDTFDMDA
                     ESLCGLQPEEALRRPSTADGEGQDERPFTQAGLGAQDQVPGLELQTSPPVSEVTTPEP
                     GIFYGLCLRLNLTASWGDLHYIGLTGLEVVGKDGEALPIQPHQLSASPRDLNDLPEYN
                     DDSRTLDKLIDGMNITTEDEHMWLIPFSPGLDHVVMIHFDRAQSIAGLRLWNYNKSPE
                     DTYRGVKIAHVSLDGLCVSPAEGFLIRKGPGNCHFDFAQEILFGDYLQTRLPPAPTRR
                     LDAKSLERASMDYEAPLMPCGFIFQFQLLSSWGDPYYIGLTGLELYDEHGERIPLSQN
                     NIAAFPDSVNALEGVCGDVRTPDKLIDQVNDTSDGRHMWLAPILPGLVNRVYVIFDLP
                     TTVSMIKLWNYTKTPQRGVKEFGLLVDDLLVYNGILAMVSHLVGGILPTCEPTVPHHT
                     ILFAEDTDFCHQEKHAIISKPEEDQDIQMMNENQVITTSRRKPGTADPALRPKTCIRE
                     KETSRRWRC"
ORIGIN      
        1 ctgtcagggc cgcttccggt tcgggaggcc ggaaccgccg cctctaggga tggacgaacg
       61 aacctcaggc caagagcggt ggtgcatgcc tcttccccag ccctcaggac atctctgtga
      121 ggatgacctc ttctacaaag gttacagtaa ggacatggtg acagactttg atgagaaaca
      181 tgatgagtat ttaatattgc ttcagcagag aaaccggata ctaaagcatt tgaaagccaa
      241 ggaccctgtg cagctgaggc tggaacactt ggagcaaggt ttctctgtct atgtcaatgg
      301 ggccaactcg gagctgaaga catcaccacg gaaagctgtg catacagact tctccagaag
      361 tgcctcacag gctgaggggt cacaggatta tggacgaaga accctattcc gagaagccga
      421 agaagtctta agacgcagct ccaggacagc accaggaaaa gtccagcgcc gaggatggca
      481 ccagaaatct gtgcagatca gaactgaagc tggctctcgt ctccacattg aacctcctct
      541 ggactgttca gaagattttg aatcacaaga agatgtgatt ggcaagcatg aggatgccac
      601 tggggagcac acacaggagc tgagaaaagg cctggggctc agcacaagcc tccagaccca
      661 agaggacggc tccagcgacg agtacgactc tattgaggaa gacgtcctct ctgagacgga
      721 gactgaggac cctgtcctgc cagtccacaa cagagatgaa tgtccacttc ccagccatga
      781 tgcagtacag aaggatgtcc ccaaggacca ggaactggaa ggccggcatc cccaggccac
      841 agacaccctt gtggtaatgg agtttaaccc agcttctaaa ggtaataaga tggaccggat
      901 tttatctgct aagcggaagg agaatgctga ggtcttcatc cccagcaaac cagactctgt
      961 cctgaatcca cagcccccag ctgtgttccc agagcaggag agagcctgtt ccagatctgg
     1021 aagccggaga gatagaccct tgtcagcaac ccgcaaagca tatgcagctg aggaccgaga
     1081 ggaagatgcc tcggctgtgc tgaaagccat ccaggtggag aacgaagctc tgcaacaggt
     1141 cttcctcagc cacgatcctg agctacatac cagtccacag caggatacca aggaaccacc
     1201 agcaaaatcc tggtccagtc tgctgaaggc caaggaggac atccctgagc tgcttcctgc
     1261 tactccagtg accaccgatc ctgagctgtg cagagcagca gcaggagcca aagctgtcag
     1321 ccaagccatg gacggaatga gccctttggg aagcagacaa cagcataaac ttgtgggagt
     1381 cttgcagact atggaaagtg acactaccca tctcagccag gtggctatac caacagagaa
     1441 gccagtacca aattcagagg aaaagtggaa agcaagagta gatgagatcg aagatgccat
     1501 ctatgtgact atggaaatcc tgtctaactg gggcaatgca tcatgggtgg gtctcacaga
     1561 agtccagttc tttgatctga acaacataaa gctttatgtc tcacctcatg atgtggacat
     1621 ccggaatgca gtgttgccag gcgaactggg gtgccttgtc aacagggact tagtgagcaa
     1681 gaaggacccc cctgtgtgga cctgcccctt ccacccacca cttcagctct atttcattat
     1741 tcacaacatg cgacagcttc gtgacttcgg tctgaccatg atcaaggttc ggaattactg
     1801 gacagcagat ggggatcttg acattggtgc taagaacgtg aaactctatg tcaacaaaag
     1861 cctcatcttt gatggcgtgt tagagaaagg aggaggtgaa gccccttctg attgtaccat
     1921 ccccgtggac cttcagagag agaggaatga gagctcagac aaggccttga gcactggctg
     1981 gaaagaaagc aaaggtgccc tcaagatggc tgccttgagt gatgctaggg agcttgggct
     2041 cagctgctca cagccagcgg aatccttgga tatgacagtt tcctcacaag gagatttcct
     2101 tggtgaaaag gtgaattcta catctggcct gaagaacagt ttgtccaagt tacaggaaga
     2161 tgtaagactg ttggcaaccc ctgcctctat gggtgatggg cccagtgtcc cttcttcatc
     2221 ctctcctggg aaatgtcttc ctctagaaga ggagccctct ttgatccaac agctggaaag
     2281 tctcagaggt aggaaaatcc ccgaaccgac cgggaaaacc ccacactggt tacagccttc
     2341 tctagcaggg atgggcaaga aacagacagt caggaagccc aaacccctgt ggctcagtcc
     2401 tgaaaaagat ctggaacaga agagcaggtt tccatctgag gatgtcatgg gtgatactcc
     2461 tggagaggtg gagaccaggg aaaaaggccc tcgtcgtgag caagggagga ctagcagctg
     2521 gaatgtcatc actgaagaga gagcccccaa agcattctcc aaagcctgtg gcgatgactt
     2581 agacatcttt agccagcttc ctaacaggga tcgccctgct agtgggagga gggccctgaa
     2641 gaaggaagcc agcagtagcc atggtgatga ccggccagcc agcaaagaag acacccaggc
     2701 ctcccagaca ctgccttggt tgcagtggta tggtgagcag gaacacgcac tgcatgcatc
     2761 atgggactcc ctcactgcct tcgaccgtgc ccaccggggc agaatctctg ccctggaacc
     2821 acagggggac atcctagatg agttcctgaa gcagcaaagg agcagccggc atgaggaatt
     2881 cccagcccct tgcagagagg aggagccaga gccctccaca gagatgggtg gtgacagcga
     2941 ctttaaaatc ccagtcctcc cttatggaca gcacttggtt attgacatca agtctacatg
     3001 gggagacaga cactatgttg gccttaacgg catagaaata ttcagctcct caggggaacc
     3061 agtacagatt tccagcataa cggcagaccc ccctgacatc aatattttac cagcttatgg
     3121 gaaagaccca cgtgtagtct ccaacctcat tgatggggtg aacaggaccc aggatgacat
     3181 gcatgtctgg ctggccccct tcacaccagg catgacccac accatctcca ttgagttcac
     3241 acacccttgc caagttgccc tgattaggat ttggaattac aataagtctc gaatccactc
     3301 cttccgaggt gtgaaggaca tcacgatgct gttggatact cagtgcatct ttgaaggaga
     3361 aattgccaaa gcctcaggaa ctctgatggg agcccctgag cactttggag acactattct
     3421 cttcaccatg gatgaggaca tcctggaggc catattctgt ttggatgata cttttgacat
     3481 ggatgctgag agcctgtgtg gccttcagcc tgaagaagcg ctaaggaggc ccagcactgc
     3541 cgacggtgaa ggtcaggatg aaaggccttt cacacaggct ggcttgggtg cccaggacca
     3601 ggtaccaggg ctagagctac aaaccagccc ccctgtctct gaagtcacca cacctgagcc
     3661 aggcatcttc tatgggttat gcctccgact aaacttgaca gcctcctggg gggacctgca
     3721 ctacatagga ctcactggcc tagaagtagt aggcaaggac ggcgaggcct tgcccattca
     3781 accacaccag ctctctgcct ctcccaggga cttaaatgac ctgcccgagt acaacgatga
     3841 ctcacggacc ctggacaagt taatcgatgg catgaacatc accaccgagg atgagcacat
     3901 gtggctgatc cccttttccc ctgggttgga ccatgtggtt atgatccact ttgacagagc
     3961 ccaaagcatt gctggcctgc gtctctggaa ctacaataaa tctcccgagg acacctaccg
     4021 aggggtcaaa atcgctcatg tgtccctgga tggcctgtgc gtgtctcctg cagaaggctt
     4081 tctcatccga aaggggcctg gcaactgtca ctttgatttt gcacaagaaa tcctttttgg
     4141 ggactaccta cagacccggc taccaccagc acccaccagg agactagatg caaagagcct
     4201 ggagcgagcc agcatggact acgaggcccc actcatgccc tgtggcttca ttttccagtt
     4261 ccagctgctg tccagctggg gcgatcccta ctacatcggc ctcacagggc tggagctgta
     4321 tgacgagcat ggggagagga tcccattgtc ccagaacaat attgctgcct tcccagacag
     4381 tgtgaatgcg ctagagggtg tttgcgggga tgtgagaacc cctgacaagc ttatcgacca
     4441 agtcaacgac accagcgatg gcaggcacat gtggttggcc cccatcctgc ctggcctggt
     4501 gaaccgagtg tatgtcattt tcgacctgcc caccactgtg tcaatgatca aactgtggaa
     4561 ttacacgaaa acgcctcaac gaggagtgaa ggagtttggc ctgctggtgg atgacctgct
     4621 tgtgtacaac ggcatccttg ccatggtgag ccacctggtt gggggcatcc tgcccacgtg
     4681 tgagcctacc gtgccccacc acaccatcct ttttgctgag gacactgact tctgtcacca
     4741 ggagaaacac gccatcatca gtaagccgga ggaagaccag gacatacaaa tgatgaatga
     4801 aaaccaggtc atcactacct cgaggaggaa gccaggcact gctgacccag ccttacgccc
     4861 taaaacctgc atacgtgaga aggagacctc aaggcgttgg cggtgctgac tggagcagga
     4921 gggagagcct cttcgagctg gctaggctct atcaccagcc ctgaacagta cccatgtcct
     4981 tcacacttca gggttggcca gctgggaccc caagggctgg aagagcatgg agggacaagg
     5041 gacttgaatc acagccccag gagctatagg ggtcagatga aagggtcaag aacaggatag
     5101 ctgtctcctg ccacatgggg ctagctgctg ggagccaggg atacctgatt cctctctgtg
     5161 cctcccctgt gaggtctata agagcagggc ctctggcatc caagtcctag gcagcccctg
     5221 acccaggctc agatctcagt accatgacca tggagcccat ggtcctccac tacacagccc
     5281 tcctcactaa gggcaacgga gctgcagaga ggccactgct gaggagccag ctgctcctcc
     5341 tctatccagt gcctttggag gcctgatggg gtgagtccta ggtagcctct gtcctctgtt
     5401 caaacctgat tcaggatggg tcaagggcat gtgtcctgct gaggagagga agtgagctgc
     5461 agtgagtgct gaaacctgcc cttagcccct atatcacaca cacacacaca cacacacccc
     5521 tacctgcaag tcagagctgg gagggcctag gctcagccct acctcttcgc cctgcagtcc
     5581 agagccccat acctgtgtgt acatctatgg aacaagctca gatcagcaac ctaatcagtc
     5641 tcccagtagt tggtaatttc tggttccaaa tattaatctg ttattttcct ggctcggggc
     5701 ccagtggggc ggtgccatgg tgccgaactc agtacattct gatactacca agaaacacaa
     5761 gcgcttttaa gcagcaacac ccagcagctg tacagatgtt ttaattcgga gccagctgac
     5821 atgcagatag gattgcttct ctgatgagaa tccatcatct ctgtagcctc tagggccccc
     5881 tccccacccc tggcttctcc aatcccagat gagccgcaca cctcccagga gagccatcaa
     5941 accaactctg cggaggaagc cagggcctct gctctaacag gagtccagct tctcctgggg
     6001 gtggggcggg gggggggagc gcaggtagat ttttctggag cacccaagac tgaccttgat
     6061 gtgctcctcc aaatacttgg tcggtgttta taagcatatg ctccatgcac tctcagaggg
     6121 aaggcactgg cagaagcatt aactctcaaa caaatgtcta tttttcttac aaaatcaata
     6181 aaagatgtta ttaagaa
//
