LOCUS       NM_024254               2883 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Mus musculus katanin p80 subunit B like 1 (Katnbl1), mRNA.
ACCESSION   NM_024254 XM_978658 XM_978705 XM_978739 XM_978777
VERSION     NM_024254.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AL683897.5.
            
            On Mar 21, 2007 this sequence version replaced NM_024254.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK168639.1, AK151464.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849380
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               AL683897.5         99507-99653
            148-263             AL683897.5         124457-124572
            264-304             AL683897.5         125054-125094
            305-584             AL683897.5         126370-126649
            585-703             AL683897.5         127882-128000
            704-754             AL683897.5         128679-128729
            755-844             AL683897.5         128820-128909
            845-934             AL683897.5         129437-129526
            935-1028            AL683897.5         130439-130532
            1029-2883           AL683897.5         132679-134533
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 57.02 cM"
     gene            1..2883
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /note="katanin p80 subunit B like 1"
                     /db_xref="GeneID:72425"
                     /db_xref="MGI:MGI:1919675"
     exon            1..147
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            148..263
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             162..1061
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /codon_start=1
                     /product="KATNB1-like protein 1"
                     /protein_id="NP_077216.1"
                     /db_xref="CCDS:CCDS16554.1"
                     /db_xref="GeneID:72425"
                     /db_xref="MGI:MGI:1919675"
                     /translation="MAFDTHHVKKRNFSNSIDLPRKRISNFTSKNMKEVKRSPKQLAA
                     YISRTVAQAVKSPEKLRKVLYHRKLVRRSFPNPCYKTKQSPKSGGCDMANKENELACA
                     GHLPENLRHDSRTFVINTSDSGSSQTESPSSKYSGFFSEVSQDHETMAQVLFSRNLRL
                     NVALTFWRKRSISELVAYLVRIEDLGVVVDCLPVLTNSLQEEKQYISLGCCVDLLPLV
                     KSLLQSRFEEYVIVGLNWLQAVIKRWWSELSSTSEIISDGNIKILKQQLSGLWEQESH
                     LTLVPGYTGNIAKDVDAYLLQLH"
     exon            264..304
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            305..584
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            585..703
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            704..754
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            755..844
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            845..934
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1028
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..2883
                     /gene="Katnbl1"
                     /gene_synonym="2410042D21Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtagctatc ccggcgggcc gcgcgcggcg gtgtttgaat ggctgtgagt ggggcccggc
       61 tggggatccg agggacgctc cgagctgccg ggagcggttc atcagcacag tggctgagct
      121 tgggcgctgc ggtaccatga ggcgccggca cttaagagat tatggcattt gatactcacc
      181 atgttaaaaa acggaacttc tctaatagta ttgatcttcc tagaaagagg atctctaact
      241 tcaccagtaa gaacatgaag gaggttaaga gatctccaaa acagttggct gcttacataa
      301 gtagaacagt tgcacaggca gtgaaaagcc cagaaaaact gcgcaaggtg ctctaccaca
      361 gaaagttagt tcgtcgttcc ttcccaaatc cttgttacaa aactaagcag tccccaaaaa
      421 gtgggggctg tgacatggca aataaagaaa atgaactggc ttgtgcaggc catctacctg
      481 aaaatttacg ccacgacagt cggacatttg tcattaatac cagtgattct gggtcttcac
      541 agacagaaag cccatcatca aaatatagtg gtttcttttc tgaagtttct caggaccatg
      601 agacaatggc ccaggttcta ttcagcagga atttgagatt gaatgtagct ttgactttct
      661 ggagaaagag aagtataagt gaacttgtag cttatttagt gaggatagaa gaccttggag
      721 ttgtggtaga ttgccttcct gttctaacca atagtttaca ggaagaaaag cagtatatct
      781 cacttggctg ctgtgtagac ttacttcctc tggtaaagtc tttacttcaa agcagatttg
      841 aagaatatgt aattgttggt ttaaactggc ttcaagcagt aataaaaagg tggtggtcag
      901 aactctcatc tacgtcagaa attataagtg atggaaatat taagatttta aagcaacagt
      961 tgagtggact atgggaacag gaaagccatc ttactttggt tccaggatat actggtaata
     1021 tagctaagga tgtagatgct tatttattac agctgcattg aaagatttca tcttataaag
     1081 atttgagtat tcagacagcg ctggattcta tgatttccaa aaggaggtct ctcctgagaa
     1141 ccgagagctg tggaagaaat aaaaccaatt tttttctttt aaaaagccac ataataaaac
     1201 cactaatgaa atcctaacaa tctacttcac attgaagtgg aaatatcaag aaggagcggc
     1261 atcaacttca atgaggtgaa agtgcactat gaagactgtt tgcctttgct gcattcagaa
     1321 ttcaaatgac tgtttgatag cgttgtttaa gaactactgg gtcttcactc ggccctgcat
     1381 aagaatatga ttgatagtat gcaaaaataa gacaggactt attaccagga actataaaga
     1441 ccaatcatta aattttttat tgtgttttat gaagaaacac ttaagtgtgt gcagctaatt
     1501 tcttctgttg gaaagacttg gaaagtttaa aacatcatag taagtaatat taaaaatttt
     1561 tgtccacact gatactgtgt acaaatgcct taattattga taagccaata tgttataata
     1621 ccaatatctt ttttaaaaaa attaaaagca accatgctct ggcatgataa aatcatggaa
     1681 ttaaatcagg ggtttacatt catgtagaat gttgttgaaa tatattcgac accatttttt
     1741 taaacttgag aaatttttag catctctgat tctttttgtc agaaacttca tgttatgttt
     1801 gtatgtatgt gttattctta tataaagaaa aaaggtgaat atgtatttgt atgaatgttt
     1861 aactggaaat gtccatggag ttggctaatt tatattcact ttttattgta tatagagttc
     1921 taatattttt catttctgta acatttaaac ttcctttgag taaatttact aaatatttct
     1981 attttttgct tttttaattc taattttata tgaaatctga ttaattcctt gacactaaat
     2041 gtgttctgaa aagttccaca caatgtttca gaattgttta cagttaatgc tgacattgta
     2101 ctttaagttc caacacagtg catcactacc tcctctaatg gttagtagga aattccagca
     2161 aaccatatgc aagcgttttt gtgttttgtt ttgttttttt tttaatatgg ccatttgaag
     2221 tatcagtgta ctcaattcta ggaagtcata acagtttgaa tcgtacctgt cttagttgga
     2281 attgcagtta gctaccactc ctgctggccc attcatcatc tttctttagt aaggcttgca
     2341 agcttccaga aaagataaat tgacttcctc ttcatattcc aatgtacatt ttaaaactta
     2401 aagcagtgac tactgagacc cccagccccc ctgccctcca gtgttatttt ttaactgaat
     2461 tctgttttgt atagctatta ttccagatat ctatgtacac cacagaatga atatccgttg
     2521 tagtaattga ttattatatc ctcagattag agtcacatcc aaatgactac agttttgtga
     2581 tttcgaggtg aggtatgtaa gaagtcattc ttcagaacgt gggggtgtca tgaacctcca
     2641 ttcccctgaa gccttcagct gggaactaca gcctttcttt cttcttagcc tgcagttttc
     2701 actgtcttat tgaaccattt gggcaggttg atgtggtttg gttggagtgt gatgctagtg
     2761 agactaaggg tttgagtctg atccttttaa attcattaac ttctcacgtg cacaaagaaa
     2821 ttctgtagtt cctgattgca tatttctttc agtatccact taataaattc agtttgtgat
     2881 ctc
//
