LOCUS       XM_030244810            8284 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus jumonji domain containing 1C (Jmjd1c),
            transcript variant X17, mRNA.
ACCESSION   XM_030244810
VERSION     XM_030244810.2
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_030244810.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8284
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..8284
                     /gene="Jmjd1c"
                     /gene_synonym="5430433L24Rik; D630035I23Rik; Jmjdic;
                     TRIP8"
                     /note="jumonji domain containing 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     mRNAs, 74 ESTs, 1182 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 31 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:108829"
                     /db_xref="MGI:MGI:1918614"
     CDS             611..7501
                     /gene="Jmjd1c"
                     /gene_synonym="5430433L24Rik; D630035I23Rik; Jmjdic;
                     TRIP8"
                     /codon_start=1
                     /product="probable JmjC domain-containing histone
                     demethylation protein 2C isoform X5"
                     /protein_id="XP_030100670.1"
                     /db_xref="GeneID:108829"
                     /db_xref="MGI:MGI:1918614"
                     /translation="MVQMTFLDDVVHSLLKGENIGITSRRRSRASQNISTVHGHYTRA
                     QANSPRPAMNSQAAVPKQNTHQQQQQRSIRPNKRKGSDSSIPDEEKMKEDKYDCVSRG
                     ENPKGKNKHVVTKRRKPEEAEKRLSMKRLRTDNASDASESSDAESSSKRVTETSSSEP
                     MPEYEPKNKVTSKVNGEEGQSQAAEEAGEETLIDTRPPWDQMQEDKNHNEGEKPKSTD
                     SHLQDKMTLRSSEQATVADHNSNDSVLQECNVENQRTVELLPKDRLVSRTPTPKCVTD
                     IKNDTHSERAAQENLNTFGLQTPENMDPNVSDSKHSNAKYLETAKQDCDQSWVSDVVK
                     VDLTQSSVTNAPSGSDKRDTEKERNHYVSYMSSLSAVSVTEDQLHKRSPPPETIKAKL
                     TTSVDTQKAKSSSSPEVVKPKITHSPDSVKSKAAYGNSQAVGERRLANKIEHELSRGS
                     FHPVPTRGSALETTKSPLIIDKNEHFTVYRDPALIGSETGANHISPFLSQHPFSLHSS
                     SHRTCLNPGTHHPALTPGPHLLAGSTSQTPLPTINTHPLTSGPHHPVHHPHLLPTVLP
                     GVPTASLLGGHPRLESAHASSLSHLALAHQQQQQLLQHQSPHLLGQAHPSASYNQLGL
                     YPIIWQYPNGTHAYSGLGLPSSKWVHPENAVNAEASLRRNSPSPWLHQPTPVTSADGI
                     GLLSHIPVRPSSAEPHRPHKITVHSSPPLTKTLADHHKEELERKAFMEPLRSNASTSV
                     KGDLDLNRSQAGKDCHLHRHFVGPRPPQETGERLNKYKEEHRRILQESIDVAPFTTKI
                     KGHEVERENYSRVVPSSSSPKSHAIKQDKDVDRSVSEIYKMKHSVPQSLPQSNYFTTL
                     SNSVVNEPPRSYPSKEVSNIYTEKQNNNLSATANPQTHSFISSLSKPPPLIKHQPESE
                     SLVGKIPDHLPHQSASHSVTTFRSDCRSPTHLTVSSTNALRSMPALHRAPVFHPPIHH
                     SLERKESSYSSLSPPTLTPVMPVNAGGKVQESQKPPTLIPEPKDSQSNFKNSSDQSLT
                     EMWRSNNNLNREKAEWPVEKSSGKSQAAVASVIVRPPSSTKVDSVPSVPLASKDRVCE
                     RSSSGANKTDYLKPEAGETGRIILPNVNLESAHVKSEKNFEAVSQGNVPVSVMSAVNV
                     VSTTKADVFTSAATTTSVSSLSSAETSYSLSNTISASTPFECTSSKSVVSQAVAQAKD
                     CTVSTAVPGTLACSKTGSAVQPGSGFSGTTDFIHLKKHKAALAAAQFKNSSVSEAELN
                     TVRNQTVAASLPLDSTMTCTASNKAISVGNGPAAQSSQPNYHTKLKKAWLTRHSEEDK
                     NTNKMENSGNSVSEIIKPCSVNLIASTSNDIENRADGRVAVDKYGRDEKVSRRKAKRT
                     YESGSESGDSDESESKSEQRTKRQPKPTYKKKQNDLQKRKGEVEEDSKPNGVLSRSAK
                     DKSKLKLQNSNSAGVPRSVLKDWRKVKKLKQTGESFLQDDSCCEIGPNLQKCRECRLI
                     RSKKGEESTHSPVFCRFYYFRRLSFSKNGVVRIDGFSSPDQYDDEAMSLWTHENYEDD
                     EVDVETSKYILDIIGDKFCQLVTSEKTALSWVKKDAKIAWKRAVRGVREMCDACEATL
                     FNVHWVCRKCGFVACLDCYKAKERKSSRDKELYAWMKCVKGQPHDHKHLMLTQIIPGS
                     VLTDLLDAMHILREKYGIKSHCHCTNRQNLQGGNVPTMNGVSQVLQNVLHHSNKTSVS
                     LPESQQQNSPQKSQTNGNSSPGSASTDSRLTPPESQSPLHWLADLAEQKSREEKQENK
                     EFTLEREIKEDGDQDASDSPNGSTSPPASQSNEQGSTLRDLLTTTAGKLRVGSTDAGI
                     AFAPVYSMGTSSGKGGRTMPNILDDIIASVVENKIPPNKTSKINIKSEPNEEPKESSL
                     PATDESNKSYRDIPHSWICDQHILWLKDYKNSNNWKLFKECWKQGQPAVVSGVHKKMN
                     ISLWKAESISLDFGDHQADLLNCKDSIVSNANVKEFWDGFEEVSKRQKNKGGETVVLK
                     LKDCPSGEDFKAMMPTRYEDFLRCLPLPEYCNPEGKFNLASHLPGFFVRPDLGPRLCS
                     AYGVAAAKDHDIGTTNLHIEASDVVNVLVYVGIAKGNGVLSKAGILKKFEEEELDDVL
                     RKRLKDSSEIPGALWHIYAGKDVDKIREFLQKISKEQGLEVLPEHDPIRDQSWYVNRK
                     LRQRLLEEYGVRACTLIQFLGDAIVLPAGTLHQVQNFHSCVQVTEDFVSPEHLVQSFH
                     LTQELRLLKEEINYDDKLQVKNILYHAVKEMVRALKMHEDEVEDMEDT"
ORIGIN      
        1 cggagcctgc gcagggcggt gccgcgcagc gcgggccgcg ggagcgggag ccgcagccgg
       61 gagcgcgccg cggagccgag cagagcccgc cgcgcgcagc gccgggcagc ggaggagccg
      121 aggagcggag cagcgcctgc cgcgtagccg aggagcggag gggaggccga ggagaagccg
      181 agcagagccc gccgcgcgcc ggggagcggc tccacggagc agagcccacc gcctgccagt
      241 ccgttcgccc gcgccctgct gctcccaacg ccgccgccgc cccggagccc cgcagcgact
      301 gggacacggg tctacgtgga atttgatgac cttgagtggg ataaacggga gtgggttaga
      361 gtttatgaag atttttcaac tttcttggtg gaatatcact taatctgggc caaaaggaag
      421 gaccctagcc agactcaggg atcaaagagc agacaaattc agtggcctgc actggacgac
      481 atagacagct taaagcccgt actcagggac aacccacagc tgcacgcgga agtgaaagtc
      541 tgggtgaagg aacagaaggt ccaggagatt tttatgcaag gtactagaac cacagaatgt
      601 cgatccttct atggttcaaa tgacctttct agatgatgtc gttcactctt tgttaaaagg
      661 tgaaaatatt ggcattacat cacggcgaag gtctcgtgcc agtcaaaata tcagcactgt
      721 tcacggtcat tatacacgtg ctcaagcaaa tagtcccaga ccagcaatga actctcaagc
      781 tgctgtacca aaacagaaca cacaccagca acagcaacaa agaagtattc gtccaaataa
      841 gaggaagggt tcagatagca gcatacccga tgaagagaag atgaaggaag ataaatatga
      901 ttgtgtatca cgaggagaaa atcctaaagg taagaacaag cacgtggtga caaaacggcg
      961 gaaacctgag gaggccgaga agaggctgag catgaaaagg ctccggacag acaatgcctc
     1021 tgacgcctcc gagagcagtg acgcagagag ctccagcaag agagtgactg agacttcctc
     1081 ctctgaacca atgccagagt atgaaccgaa aaataaagtc acctcaaagg taaatggaga
     1141 ggagggacag tcccaggctg ctgaagaggc aggagaagag accctgatag atactcggcc
     1201 tccctgggac cagatgcagg aagataaaaa ccacaacgaa ggggagaagc ccaagtccac
     1261 ggacagccac cttcaagaca aaatgactct ccgttcatct gagcaagcca cagttgctga
     1321 ccacaattct aatgattcag tccttcaaga atgcaatgtg gaaaaccaac gcacagtgga
     1381 attattacca aaggacaggt tagtgtccag aacaccgaca cccaaatgtg ttacggatat
     1441 caagaacgac actcattctg agagggcggc tcaggaaaat ttaaatactt ttggcctcca
     1501 gacacctgag aacatggatc caaatgttag tgattccaaa cattcaaatg ctaaatacct
     1561 agaaacagca aagcaagatt gtgaccagag ctgggtcagt gatgtagtga aagtggattt
     1621 aactcagtca agtgttacaa atgctccttc aggaagtgat aagcgcgata cggagaaaga
     1681 gagaaatcac tatgtctcat acatgtcttc attaagtgca gtttctgtca cagaggatca
     1741 gctacataaa cgaagtccac ccccagaaac tataaaagct aaactaacta cttcagtaga
     1801 tacccagaag gcaaaatcca gttcttcacc tgaagttgtt aaacccaaga tcactcattc
     1861 tcctgattct gtgaagtcta aagctgctta tgggaacagt caagctgttg gtgagcgaag
     1921 gctggcaaat aaaatagagc atgagttatc cagaggtagt ttccatccag ttcctactcg
     1981 aggcagtgct ttggaaacta caaagagccc tcttatcatt gataaaaacg agcacttcac
     2041 agtctatagg gatcctgctc ttattggatc agaaacagga gctaatcaca tttcaccttt
     2101 tttgagccag catccttttt ctcttcattc ctcatcccat agaacctgtt taaacccagg
     2161 tacccatcac cctgccttaa cgccaggacc ccacttacta gctgggtcaa ctagtcaaac
     2221 tccattacct accattaaca ctcaccctct cactagtggt ccacaccatc ctgtccatca
     2281 ccctcatttg cttcccactg tgttacctgg agtgcctact gcctctttac tcggtggcca
     2341 cccacgtcta gagagtgctc atgcaagcag cttgagccat ttagcactag cacaccagca
     2401 gcagcaacag ttgttacagc accagtcacc tcatcttctt ggacaagccc atccttccgc
     2461 ttcatataat cagcttggac tttatccaat tatttggcaa tatccgaatg gaacacatgc
     2521 atactcagga cttggtctcc cttcttctaa gtgggttcac ccagaaaatg cagttaatgc
     2581 tgaagcttca ttaaggagga attctcccag tccttggcta catcaaccca ctcctgtgac
     2641 ctcagcggat ggtattggat tacttagtca cattcctgtc agaccttcca gtgcagagcc
     2701 tcatcgacct cacaagatta cagtgcattc cagtccccca ctgacaaaga cattagcaga
     2761 tcaccacaaa gaagaattgg agaggaaagc ttttatggaa ccattacggt ctaatgcatc
     2821 cacatcagta aaaggtgacc tggatcttaa taggtcacag gcaggaaaag attgtcactt
     2881 gcataggcat tttgtgggtc caaggccacc ccaggagact ggagagagac tgaacaaata
     2941 caaggaggaa catcgtcgga ttcttcagga gagtattgat gtggctccat ttacaaccaa
     3001 aatcaagggt catgaggttg aaagagagaa ttactccaga gtagtaccat catcttctag
     3061 tcctaaaagc catgctatca aacaagataa agacgtagac cgctccgtgt cagagattta
     3121 taagatgaag cactcagtgc ctcagagttt gccccagagt aactacttca ctactttatc
     3181 taatagtgtg gtcaatgagc caccaagatc ctacccatcc aaagaagttt ccaacattta
     3241 cactgagaaa caaaataata acctttctgc aacagccaat cctcaaactc attcttttat
     3301 atcatctctt tcgaagcctc cacctttgat taaacaccaa ccagaaagtg aaagtttagt
     3361 gggcaagata ccagaccatc ttccccatca gagtgcatct cactcagtaa caacgttcag
     3421 aagtgattgt cggagcccta cccatctgac tgtttcttct actaatgcac tccgcagcat
     3481 gcctgctctg cacagggcac cagtattcca tccaccaatc caccacagtt tggaaagaaa
     3541 ggaaagcagc tacagtagcc tttcccctcc aacactgaca ccggtgatgc cagtaaatgc
     3601 tggtggcaaa gttcaagaat ctcagaagcc tccaactcta attcctgagc caaaagactc
     3661 tcagtcaaat tttaagaatt cttctgatca gagtctaacg gaaatgtgga gatctaataa
     3721 caacctcaac agagagaaag ctgagtggcc cgtggaaaag agtagtggaa agtcccaggc
     3781 tgctgtggca tctgtcattg ttcgtccacc ttctagtaca aaagttgata gtgtgccatc
     3841 tgtaccatta gcttccaaag atcgagtttg tgaaagatct tcatctgggg caaataaaac
     3901 agattacctc aaaccagaag ccggagagac tggaagaatt attctaccaa atgtgaattt
     3961 agaaagtgct catgtgaaat ctgaaaaaaa ctttgaagct gtctcccagg gcaacgttcc
     4021 tgtttcagtc atgtctgctg taaatgtagt ctctactacc aaagcagatg tgttcacatc
     4081 tgctgccact accaccagtg tctccagctt gagtagtgca gaaacaagtt attctttatc
     4141 aaataccatt tcggcctcta cacccttcga atgtacttct tcaaaaagtg ttgttagtca
     4201 ggcagtggcg caagcaaagg actgcacagt cagcaccgcg gttccaggca ctctggcctg
     4261 tagtaagaca ggaagtgctg ttcagcccgg ctctggcttc tcaggcacaa ctgattttat
     4321 tcatttaaaa aagcacaagg cagcgttggc tgcagctcag tttaaaaata gtagtgtcag
     4381 tgaggctgaa cttaatactg tgagaaatca gacagtggca gcctctcttc ccctggatag
     4441 caccatgacc tgcactgcaa gtaacaaagc aatctctgta ggaaatgggc cagcagccca
     4501 gtccagtcag cccaactacc acactaaact gaagaaggcc tggctcacca gacattcaga
     4561 agaagataaa aatactaata aaatggaaaa ttcagggaat tctgtatccg aaattattaa
     4621 gccatgttct gtcaacttaa tagcctctac atctaatgat atagaaaatc gtgcagatgg
     4681 cagagtcgct gtagataaat atggaagaga tgagaaagtc agcaggagaa aagccaaaag
     4741 aacttacgaa tctggctctg aaagtggaga ctcagatgag agcgaaagca agtcggagca
     4801 gaggactaaa cggcagccga agccaactta taaaaagaag cagaacgacc tgcagaagag
     4861 gaaaggcgag gtcgaagagg actcgaagcc taatggagtt ctcagcagga gcgccaagga
     4921 caaaagtaaa ctgaagttgc agaacagtaa tagcgctggc gttcctcgtt ccgtgctgaa
     4981 agactggcgg aaggtcaaga agctgaagca aactggagaa tcatttctgc aggatgactc
     5041 ctgctgtgag ataggtccca acttacagaa gtgccgagag tgcagactta tccggagtaa
     5101 gaagggggaa gaatcaactc actcaccggt gttttgtaga ttttactact ttaggagatt
     5161 gtcctttagt aagaatggag tagtcagaat agatggtttc tcttctcctg atcaatacga
     5221 tgatgaagcc atgagtttat ggacccatga aaattatgaa gatgatgaag tagatgttga
     5281 aacctctaag tatatcttgg acataatagg tgataagttc tgtcagttag taacgtctga
     5341 gaaaacagcg ttgtcctggg tgaaaaagga tgccaaaatt gcatggaaaa gggcagttcg
     5401 aggtgtccgg gagatgtgtg atgcgtgcga ggccacactg ttcaacgtcc actgggtttg
     5461 ccgcaagtgt ggatttgtgg cttgcttgga ctgttacaag gccaaggaaa ggaagagttc
     5521 tagagataaa gagctgtatg cttggatgaa gtgtgtgaaa ggccagcccc atgaccataa
     5581 gcatctgatg ctgactcaga ttatccctgg ctctgtgttg acagaccttc ttgatgccat
     5641 gcacattctt agggaaaaat atggtattaa atcccattgt cactgtacaa acagacagaa
     5701 tttacaaggt ggaaatgttc ctacaatgaa tggtgtgtct caagttctac agaatgttct
     5761 tcaccacagt aataagactt ctgtgtccct gcctgagtct cagcagcaga acagccctca
     5821 gaaatctcag actaacggca acagtagccc tggaagtgca agtacagaca gcaggttgac
     5881 acctccagag tcccagtcac cgctgcactg gctagctgat cttgctgagc agaaatccag
     5941 agaggaaaaa caagaaaaca aagaatttac tcttgaaagg gaaatcaaag aagatggaga
     6001 ccaagatgcc tctgattctc caaatggcag cacatcacct ccagcatccc agagcaacga
     6061 acagggttca accctacgtg atttgctgac cacaacagct ggcaagcttc gtgtgggctc
     6121 tacagatgct ggcattgcct ttgcgccagt atattcaatg ggaacctcaa gtggcaaagg
     6181 tggccggact atgcctaaca ttcttgatga catcattgct tcagttgttg aaaacaaaat
     6241 tccaccaaat aaaacctcca agatcaatat aaaatcagaa cctaatgaag aacccaaaga
     6301 aagcagtctg cctgccacgg atgaaagcaa taagtcttat cgtgacatac cacattcttg
     6361 gatctgtgac cagcatattt tatggcttaa agattacaag aatagtaata actggaagct
     6421 tttcaaagag tgctggaaac aaggacagcc tgcagtggtt tccggtgtgc ataagaaaat
     6481 gaacattagc ttgtggaagg cagaatcaat tagtctggat tttggagacc accaagctga
     6541 tctcctcaac tgcaaagaca gcattgtttc caatgccaac gttaaggagt tctgggatgg
     6601 ttttgaagaa gtgtcaaaac gtcaaaaaaa caaaggtgga gaaacagtag tattaaagtt
     6661 gaaagactgc ccatctgggg aggacttcaa ggccatgatg ccaacaagat atgaagactt
     6721 tttaagatgt ctgccattac cagaatattg caacccagaa gggaagttca atttggcctc
     6781 ccatttgcca gggttctttg tacgccctga tctaggaccc aggctgtgca gtgcctatgg
     6841 tgttgctgct gctaaggatc atgatatagg aaccacaaat cttcacattg aagcttctga
     6901 tgttgtcaat gtcctagtct atgtcggcat agcaaaagga aatggcgtcc tctcaaaagc
     6961 aggaatactt aagaaatttg aagaagaaga attagatgat gttttaagaa aaagattaaa
     7021 ggattcgagt gaaatccctg gtgctctatg gcatatttat gctggaaaag atgttgacaa
     7081 gataagggaa tttcttcaaa agatttcaaa agaacaaggc cttgaagttc tgccagagca
     7141 tgatccaatc cgggaccaaa gctggtatgt gaatagaaag ctccgccaga gactgcttga
     7201 ggaatatggg gtgagagcct gcactctgat tcagttcctt ggtgatgcca ttgttttgcc
     7261 agcaggaaca cttcaccagg tacaaaattt tcacagctgt gttcaggtga ccgaagactt
     7321 tgtctctcca gaacatcttg tacagtcgtt tcacttaaca caggagctga ggcttttgaa
     7381 ggaagaaatc aattacgatg ataaactcca ggttaagaat atcttgtatc atgcagtcaa
     7441 ggaaatggtg agagctctga agatgcatga agatgaagta gaggatatgg aagacaccta
     7501 attgcggttg gaactgggat gccccttgag tgacgctagg tctgacttaa gctccattaa
     7561 accatcagtg ccaagaaatt ctctttgtag taattacttg ctactgacac cataccagta
     7621 tagcattatg ccacagcccc tgtgattcaa tgctagctat aaaccaagct aaatttaaaa
     7681 gcagtactat atagctgttc ctgtatcata gtgtatatga tgtttgtgaa gatgccagat
     7741 ttaaaatgat gtatttattt ttggtaaaaa aaaaaatcta tgctatattg ttgatcaagt
     7801 gtaaatgtgc tgttgtacag tttaataaaa taactgatat ttttcactac attgagacag
     7861 ttactgtgag actaggacac accagctgtt gcctgcgttt gggaaattgc tggattgcac
     7921 agcagtcacg tcataatcag aaaattactg ccaaataatt gtaaaatgtg taaaatacaa
     7981 agtacataaa gtagatacta aactcagaca cttcaatatt ttgttgaagc tattgactgt
     8041 acaattaaac gttttcaaaa ggtgtaattt atttaaaatt gtctcatttt ggtaaaattt
     8101 atgtgaagtt ttaaagctaa atattaaact taatatgcta tgtaaatata tacatatata
     8161 catttaagga tgtatttttt taaaacattg gcttgctttt gttaaagtgc aagtgttaca
     8221 tatggctttg tacattacag ttgaaagggg ttttacattt tccattaaaa gactttatca
     8281 agaa
//
