LOCUS       NM_001406239            4844 bp    mRNA    linear   ROD 13-JUN-2024
DEFINITION  Mus musculus jade family PHD finger 3 (Jade3), transcript variant
            3, mRNA.
ACCESSION   NM_001406239 XM_011247476
VERSION     NM_001406239.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4844)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4844)
  AUTHORS   Chang,S.H., Yun,U.J., Choi,J.H., Kim,S., Lee,A.R., Lee,D.H.,
            Seo,M.J., Panic,V., Villanueva,C.J., Song,N.J. and Park,K.W.
  TITLE     Identification of Phf16 and Pnpla3 as new adipogenic factors
            regulated by phytochemicals
  JOURNAL   J Cell Biochem 120 (3), 3599-3610 (2019)
   PUBMED   30272815
  REMARK    GeneRIF: these data showed previously uncovered roles of Phf16 and
            Pnpla3 in adipogenesis, highlighting the potential of using
            phytochemicals for further investigation of adipocyte biology.
REFERENCE   3  (bases 1 to 4844)
  AUTHORS   Tzouanacou,E., Tweedie,S. and Wilson,V.
  TITLE     Identification of Jade1, a gene encoding a PHD zinc finger protein,
            in a gene trap mutagenesis screen for genes involved in
            anteroposterior axis development
  JOURNAL   Mol Cell Biol 23 (23), 8553-8552 (2003)
   PUBMED   14612400
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX294384.19 and AL672073.8.
            
            On May 11, 2022 this sequence version replaced XM_011247476.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR9219380.249.1,
                                           SRR14777531.29644.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-43                BX294384.19        125701-125743
            44-152              BX294384.19        128936-129044
            153-240             AL672073.8         3972-4059
            241-297             AL672073.8         29277-29333
            298-377             AL672073.8         30873-30952
            378-535             AL672073.8         48275-48432
            536-613             AL672073.8         56059-56136
            614-804             AL672073.8         58463-58653
            805-1016            AL672073.8         62918-63129
            1017-1184           AL672073.8         68187-68354
            1185-1301           AL672073.8         71157-71273
            1302-1772           AL672073.8         79781-80251
            1773-1890           AL672073.8         81497-81614
            1891-4844           AL672073.8         85747-88700
FEATURES             Location/Qualifiers
     source          1..4844
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 15.9 cM"
     gene            1..4844
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /note="jade family PHD finger 3"
                     /db_xref="GeneID:382207"
                     /db_xref="MGI:MGI:2148019"
     exon            1..43
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            44..152
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            153..240
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            241..297
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     CDS             249..2801
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /note="isoform 3 is encoded by transcript variant 3;
                     protein Jade-3; PHD finger protein 16; jade family PHD
                     finger protein 3"
                     /codon_start=1
                     /product="protein Jade-3 isoform 3"
                     /protein_id="NP_001393168.1"
                     /db_xref="GeneID:382207"
                     /db_xref="MGI:MGI:2148019"
                     /translation="MMKRHRPVSSSESSDECPSTSFTSSSMYRKKSKNPKEQKKSAEV
                     FRKDLISAMKIPDSHHVNPDSYYLFTDTWKEEWEKGVQVPANPDSVPTPSLRSRNRTL
                     PTPQKPFFCSLPVTDLPHRRIISEKVKEMLFVRPRKYIRCSSPESAEPGYINTLEQAA
                     STCRYDLDDMDIFWLQELNEDLGEMGYGPIDETLMEKTIEVLERHCHENMNHAIETVE
                     GLGIEYDEDVICDVCRSPDSEEGNDMVFCDKCNVCVHQACYGILKIPEGSWLCRSCVL
                     GIYPQCVLCPKKGGAMKTTRTGTKWAHVSCALWIPEVSIACPERMEPVTKISHIPPSR
                     WALVCNLCKLKTGACIQCSVKSCITAFHVTCAFEHGLEMKTILDEGDEVKFKSFCLKH
                     SQNKPKLGDAEYHHHRVAEQSQAKSEKTSLRAQKLRELEEEFYTLVQVEDVAKEMELS
                     AFTVDFIYNYWKLKRKSNFNKPLIPPKEEEENGLVQPKEESIHTRMRMFMHLRQDLER
                     VRNLCYMISRREKLKLSHTKVQEQIFGLQVQLINEEITEGLSLTNALENSLFYPPPRI
                     TLKLKMPKSTSEDCKDSSTETEHQLSSPGSSSPGHSKRSPQMPEEPLDMNVKIYPRYP
                     LESKSNCLQTSRSHSRCETKSSSPTPRAPSAEFYHGQSLGKPLALQAALHGQVSIGNG
                     KNQPNSRVSSSNGLEGNWSGNITQKVNSSEVCYDQESMLSSHLPSPGNIRKSSMEHFS
                     RSFKEATNTWVKPTEDLQYCVKPTKNVSSKEQLWGRQLLRRPTGRASYQETDGYCPDL
                     EPSDSEAEGEGSKETPRVKRESSDRENPSHDSARECHGKTKTHPHSHSSMQR"
     exon            298..377
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            378..535
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            536..613
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            614..804
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            805..1016
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1184
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1185..1301
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1302..1772
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1773..1890
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     exon            1891..4844
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /inference="alignment:Splign:2.1.0"
     regulatory      4823..4828
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /note="hexamer: ATTAAA"
     polyA_site      4844
                     /gene="Jade3"
                     /gene_synonym="5730598B06; mKIAA0215; Phf16"
                     /note="major polyA site"
ORIGIN      
        1 agtgtgcggc gaggaaggag cggagcgaga cgctgcgccg gaggtctttc catagacaac
       61 agaagcaagg ctcctataat caaaagtgcc tctttgctga gtcattggga aaaacttgtc
      121 tgatccaatc tgctagactt ggaaaagggg agtgacgaat ccagcatcat actgtggagt
      181 ggccaagatc taccagtgtg ggggcatcag actttgacct tacgttggaa gatctcagag
      241 gatgcaccat gatgaaacgg catagacctg tcagcagcag tgagagttca gatgagtgtc
      301 cttccacttc ctttacttct agctcaatgt ataggaagaa gtcaaaaaat cctaaggaac
      361 agaagaagtc tgctgaggta ttccgaaagg acctcatcag tgccatgaaa attcctgact
      421 ctcaccatgt taatcctgac agctattacc tctttactga cacatggaaa gaagaatggg
      481 aaaaaggagt ccaagtacca gccaatccag actctgttcc aacgccgtct ctcagatcaa
      541 gaaatagaac attaccaaca ccccagaagc ctttcttctg ctccctgcca gtaactgacc
      601 tccctcaccg taggattata tctgaaaaag taaaggagat gctttttgtc cggccccgga
      661 aatatatccg ttgctccagc ccagagtctg cagaacctgg ctatatcaat accctggagc
      721 aagcagcatc tacatgccgc tatgacctag atgacatgga tatcttttgg cttcaggaac
      781 tcaatgaaga ccttggagaa atgggttatg gcccaattga tgagactctt atggaaaaga
      841 caatagaagt tctggaacgc cactgccatg aaaatatgaa ccatgctatt gaaacagtgg
      901 aagggctagg aatagaatat gatgaagatg tgatctgtga tgtgtgccgg tctccagaca
      961 gtgaagaagg gaatgatatg gtattctgtg ataagtgtaa cgtctgtgta catcaggctt
     1021 gctatggcat tctcaagatt ccagaaggta gttggctgtg ccgctcctgt gtcctgggca
     1081 tttatccaca gtgtgtttta tgtcctaaga aaggtggagc catgaagacc accagaacag
     1141 ggactaaatg ggctcatgtc agctgtgccc tgtggattcc agaagtcagt atcgcttgtc
     1201 ctgagagaat ggagcctgtc acaaaaatct cccatatccc acctagccgg tgggccttag
     1261 tttgcaacct gtgcaagttg aagacagggg cttgtattca gtgctctgtg aaaagctgta
     1321 tcactgcctt tcatgtcacc tgtgcctttg agcacggcct ggaaatgaag accatcctag
     1381 atgaggggga tgaagtaaag ttcaagtcat tttgcctcaa gcatagccaa aacaagccaa
     1441 aacttgggga cgccgagtac caccaccaca gagtcgccga gcagagccag gcaaaaagtg
     1501 agaaaaccag cctacgggca cagaagcttc gtgaactaga agaagaattc tataccttag
     1561 tccaggtaga agatgttgcc aaagagatgg agttatctgc gttcactgtc gattttatct
     1621 ataactactg gaaactaaag cgcaaaagca acttcaataa gccattaatt cccccaaaag
     1681 aagaggaaga aaatggcttg gttcagccaa aagaagaaag cattcacact cggatgagaa
     1741 tgtttatgca tctgcggcag gaccttgaga gggtccgaaa tctgtgctac atgataagca
     1801 gacgagagaa gctgaaacta tcacacacca aagtgcagga acagattttt ggtttgcaag
     1861 tccagcttat caatgaagaa attacagaag gactttcttt gacaaatgca ctagagaact
     1921 cactgtttta tccaccacca cgaattacct taaagttaaa aatgcctaaa tcaacctcag
     1981 aagattgcaa agacagctcc acagaaactg aacaccaact ctcgtctcct ggcagcagct
     2041 cccctggtca cagtaaaagg agccctcaga tgcctgagga accactggat atgaatgtga
     2101 aaatatatcc aagatatcca ctagaaagca aaagtaactg tttgcagact agccgaagcc
     2161 attctcgatg tgaaaccaag agctccagtc ctactccgag agctccatct gcagaattct
     2221 atcatgggca atcactaggg aagcctctgg cccttcaggc tgccctccat ggacaggtgt
     2281 ctattggtaa tgggaagaat cagcctaact ccagggtttc tagttccaat ggcctggagg
     2341 gcaactggtc tgggaacatc acccagaaag ttaattcaag tgaggtgtgc tatgaccagg
     2401 agtccatgct cagctcccac ttacccagtc caggcaacat tagaaaatct agcatggaac
     2461 atttcagcag gtccttcaag gaggccacca atacatgggt gaagcctact gaggacctcc
     2521 agtactgtgt taagccaact aagaatgtga gctctaagga gcagttgtgg ggtagacagc
     2581 ttctcaggcg tcccacagga agagcttcat atcaggaaac tgatggctat tgccctgatt
     2641 tggagcccag tgattcagaa gcagaagggg aggggagtaa agaaacacca agggtaaaga
     2701 gagagagttc tgacagagaa aatccttccc atgattctgc tcgggagtgc catgggaaaa
     2761 ccaagacaca ccctcattcc cacagctcaa tgcaaaggtg atcagaaacg cctaagagta
     2821 acccagcctt tgccccgtat actgggggaa atataaacac caaaaggatt ctagtatata
     2881 ttagggggaa ttgcagggaa aatgatggtt tgaagttttt gaaagcattt caggtctagt
     2941 ttttataagc acattacaag agttgcagat tgtctggggt tgctttgtcg gaggctgctg
     3001 ggaacagttg ggcccagagt atttgctcag ttagtacttc agggcagctt tcccgttaca
     3061 ttaacacact gattaatcta catactaaga atccttgcat tgtcaatgga tttgcaagag
     3121 gatgtgacag acactaaaac tacttatctt ttgaaactat aacatgtgac tccttgaagc
     3181 tcaaatctag aaaatttcta attccactgg tatctgtaaa accttcaaga gagagaccag
     3241 gagagcaaca gtctcagata ctgactctta ctgttgtctt ccttgcttca tgcaaggttg
     3301 agtttctttc acagtatcct atcttccaaa gtcagttctt gtaggtgtcc agtgcctgtt
     3361 cctagaccta cttcttgggg acacattcat aactctctta tccagctaac aagctaactt
     3421 gtgaatagtg tttacaaaag tacagaagta ctacttccaa ggaaaatgct ctgcttctca
     3481 aggcatttgt gaagatgtcc agaacatttc ccaaagtgtg accttttctg gtatatttgt
     3541 accaggtcag ggtttttttc tgttgttttc aaataagttt gagtaaagtt tggctgacag
     3601 tttttgtata cctgctttaa tgtttataaa atttttattg aggaataatt aagatatagt
     3661 gtaatacaca gaggcttaag tattcttaac gtgctttaat tttgaaacag atttttattg
     3721 tcagaaattt gaaagcatgt gttcagcaca tggatataat ttagcttttt atgaatttta
     3781 aatccaaggc catttcccaa gcataaaagt tggagccatt tttcagaact tgcttatacc
     3841 acattaccaa ataatcagcc ttgattcatt tctagacgaa gagaattttg aagcagggga
     3901 taaaacaagt ctgcttcccc tttaagcaaa aggagaaagt aacagtttat aaacatgtgt
     3961 gaggcagact gtaattctca gcttcctttt cttcttagcc ttaaaataat attctctttc
     4021 ttctagttcg ggaacatata gagagaattt tcaaacaaga ggccattttc aatttctgaa
     4081 gtttcatgct agtgaaagaa gccagctgca gtaggtgcca gtgctatgga gctagaaaac
     4141 tcagcagttt gcctctgctt cactttcatt cctagaacct cattaaaggt ttctttgggg
     4201 ttttgttttc tcctgttttg aaattttgtg tattttgcct ctcttttggc tgcatcttca
     4261 aaataattcc ttttgtgcct atgaacatgt gtgaacagac cataacatga ataataggtg
     4321 tcctgtattt tcttttagtt gaaaacatga gggagagaat ttcctttctt cataccctca
     4381 gcttctgtgc ttatttgaat actcataggg tacatataaa tttaacactt tcatggtaat
     4441 gagtataatg aagctgagtt gtaaattcct taaaggccaa caggttgcct gtgtcctttc
     4501 atgcttttga attctgaggc aggggagcaa acatggaaac agtgctttag ccaaattcca
     4561 tatgtaatgc cattggaaga gtattgcctg aaaaattcaa gtcagggaga taaaatggta
     4621 acttttttag agaattttcc tgggtaaaca aatgagccag ccttccattg tatacattcc
     4681 aaatgcccca agcatctgct acattttgtt ctttgaagta ttacctctta acctttgtta
     4741 atgttttttg tcttgtctta taaaagtttt gaagatgaac tcaatctttt ttcaaatgtc
     4801 acctttttat caatactttt tcattaaatt atgaaaactg ttaa
//
