LOCUS       XM_030252630            5426 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus jade family PHD finger 1 (Jade1),
            transcript variant X1, mRNA.
ACCESSION   XM_030252630
VERSION     XM_030252630.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000069.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5426
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="3"
     gene            1..5426
                     /gene="Jade1"
                     /gene_synonym="D530048A03Rik; mKIAA1807; Phf17"
                     /note="jade family PHD finger 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     mRNAs, 28 ESTs, 806 long SRA reads, 24 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 6 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:269424"
                     /db_xref="MGI:MGI:1925835"
     CDS             67..2571
                     /gene="Jade1"
                     /gene_synonym="D530048A03Rik; mKIAA1807; Phf17"
                     /codon_start=1
                     /product="protein Jade-1 isoform X1"
                     /protein_id="XP_030108490.1"
                     /db_xref="GeneID:269424"
                     /db_xref="MGI:MGI:1925835"
                     /translation="MKRGRLPSSSEDSDDNGSLSTTWSQHSRSQHGRSSTCSRPEDRK
                     PSEVFRTDLITAMKLHDSYQLNPDDYYVLADPWRQEWEKGVQVPVSPGTIPQPVARVV
                     SEEKSLMFIRPKKYIASSGSEPPALGYVDIRTLADSVCRYDLNDMDAAWLEVTNEEFK
                     EMGMPELDEYTMERVLEEFEQRCYDNMNHAIETEEGLGIEYDEDVVCDVCQSPDGEDG
                     NEMVFCDKCNICVHQACYGILKVPEGSWLCRTCALGVQPKCLLCPKKGGAMKPTRSGT
                     KWVHVSCALWIPEVSIGSPEKMEPITKVSHIPSSRWALVCSLCNEKFGASIQCSVKNC
                     RTAFHVTCAFDRGLEMKTILAENDEVKFKSYCPKHSSHRKPEEGLGEGAAQENGAPES
                     SPQSPLEPYGSLEPNREEAHRVSVRKQKLQQLEDEFYTFVNLLDVARALRLPEEVVDF
                     LYQYWKLKRKINFNKPLITPKKDEEDNLAKREQDVLFRRLQLFTHLRQDLERVRNLTY
                     MVTRREKIKRSVCKVQEQIFTQYTKLLEQEKVSGVPSSCSSALENMLFFNSPSVGPNA
                     PKIEDLKWHSAFFRKQMGTSLVHPLKKSHKRDAVQNSSGTEGKTSHKQPGLCGRREGL
                     EVSESLLSLEKTFAEARLLSSAQQKNGVVTPDHGKRRDNRFHCDLVKGDLKDKSFKQS
                     HKPLRSTDTSQRHLDNTRAATSPGVGQSAPGTRKEIVPKCNGSLVKVPITPASPVKSW
                     GGFRIPKKGERQQQGEAHDGACHQHSDCSHLGVSRAPAKERAKSRLRADSENDGYAPD
                     GEMSDSESEASEKKCIHASSTISRRTDIIRRSILAS"
ORIGIN      
        1 tgcaagttgc aaaaccttcc cgtgcacgtg tctggtgcct gctgcctgct gtctcccggg
       61 gagatcatga aacgaggtcg ccttcccagc agcagtgagg attctgacga caatggcagc
      121 ttgtcaacga catggtccca gcattctcga tcccagcatg ggaggagtag tacctgctct
      181 agacctgaag atcgaaagcc ttctgaggtg tttaggaccg acctgatcac tgccatgaag
      241 ttgcatgact cctaccagct gaacccggat gactactacg tgctggctga tccctggaga
      301 caggagtggg agaaaggggt ccaggtgcct gtgagcccag ggaccatccc acagcctgtg
      361 gccagggttg tgtctgaaga gaagtctctc atgttcatca ggcccaagaa gtacatcgcg
      421 tcgtccggct ctgagccccc agcgttaggc tacgtcgata tccggactct ggcagacagt
      481 gtgtgtcggt atgacctcaa tgatatggat gctgcgtggc tggaagtaac caatgaagaa
      541 tttaaggaga tggggatgcc ggagctggac gagtacacca tggaaagggt cttggaggaa
      601 ttcgaacagc gatgctatga caatatgaat catgccatag agacagaaga gggcttgggg
      661 attgaatacg acgaagacgt tgtctgcgat gtctgccagt cacctgatgg cgaggacggc
      721 aacgagatgg tgttctgtga caagtgtaac atctgtgtgc accaggcttg ctatgggatc
      781 ctcaaggtgc cagagggcag ttggctatgt cgtacatgtg ccctgggagt tcagccaaaa
      841 tgtttgctgt gtcccaagaa aggcggagct atgaagccga cccgcagcgg aaccaagtgg
      901 gtccacgtca gctgtgccct gtggatccct gaggtaagca ttggcagccc tgagaagatg
      961 gagcccatca caaaagtgtc tcacattccc agcagccggt gggcgcttgt gtgcagcctc
     1021 tgcaatgaga aattcggggc ctccatacag tgctctgtga agaactgccg gacagccttc
     1081 cacgtgactt gtgcttttga ccgtggcctg gagatgaaga ccatattggc agagaatgat
     1141 gaagtcaaat tcaagtccta ctgcccaaag cacagctcac acaggaaacc cgaggagggc
     1201 ctgggtgaag gagcagccca ggagaatggg gcccctgaga gttctcccca gagccctctg
     1261 gagccctatg gtagtctgga gccgaatcga gaggaggccc accgggtgag tgttcgcaag
     1321 cagaagctac agcagctgga ggatgagttc tacacctttg tcaacctgct ggatgtggcc
     1381 agggcgctgc ggctgcctga ggaagtggtg gatttcctgt accagtactg gaagttgaag
     1441 aggaagatca acttcaacaa gcccctcatc accccaaaga aagacgaaga ggacaatcta
     1501 gccaagcggg agcaggatgt cttgtttagg aggctgcagc tgttcacgca cctgcggcag
     1561 gacctggaga gggttcggaa cctcacttac atggtgaccc gcagggaaaa gattaaacgg
     1621 tctgtgtgca aagtccagga acaaattttc actcagtaca ctaagctctt ggagcaagaa
     1681 aaagtttcag gtgtgccttc ttcctgctcc tccgcactgg agaacatgct ttttttcaac
     1741 agtccttctg tgggccccaa tgctcccaag atagaggact tgaaatggca ttctgcattc
     1801 ttcaggaaac aaatgggcac ttccttggtt catccactga aaaagtccca taaacgagat
     1861 gcagtgcaga atagttctgg gaccgagggc aagacctcgc ataagcagcc aggtctttgt
     1921 ggtagaaggg aggggctgga ggtctcagaa agcttgctga gcttagaaaa gacttttgca
     1981 gaagcacgtc tcctatcatc agcacaacag aaaaatggtg tggtgacccc agaccatggg
     2041 aaaagaagag acaatcgttt tcattgtgat ctcgttaaag gagacttaaa ggacaaatct
     2101 tttaagcaga gtcacaagcc tctcaggtcc acagacacat cccagaggca tctggacaac
     2161 acaagagctg ccacctcccc tggagtaggg cagtcagcac ctggcaccag gaaggagatt
     2221 gtgcccaagt gcaatggctc cctagtcaaa gtgcctataa cacctgccag cccagtgaaa
     2281 agctggggag gattccggat tccaaagaag ggggagcggc agcagcaagg agaagcccat
     2341 gatggggcct gccaccagca ctcagactgc tcccatctgg gtgtaagccg agctccagcc
     2401 aaggagagag cgaagagcag gttaagagct gacagtgaga atgatgggta cgcccctgat
     2461 ggggaaatga gtgactcaga gagcgaggca tcagagaaga aatgtatcca tgccagcagc
     2521 accatcagca ggaggacaga tatcatcagg cgaagcatct tggcctcttg atgaaacagc
     2581 cggtgtggaa gcacatggct tgttgccgtg tgctgaggag agctctgata ataggggcaa
     2641 gcaaataccc attgtttctg agctacagac atacttcctt gcaattcaga ttgaattttt
     2701 ttccagagtc atttataaat cattgtgaga agtttgtgtt atttgcaact tgttgaggaa
     2761 acagaagagt agactgtaac cataagacac taagattaga acctgaacta aacactataa
     2821 aaaaaaaacc aacaaatgaa gtaactttgc agagggccag gcttgaatag caccatgtat
     2881 tattgccctc tacattctcc ccaaagcaca aactcttgaa tactcactct tacagaatca
     2941 tagaattctg tgtggtgaac aagtcctatt tctagaagcc ctcatgtacc atttatagcc
     3001 cacaaagctt attttctagg aatggtaaat gctgacggca tttggctccc aggctgtgtg
     3061 gtatgaggag ctgaggttct gaagcttcac aacactggga tcttgcacat gtggcatcca
     3121 ggggaagagt ttacacaaca ggcattgctg gaaggctgca gggacagagc agagctgctg
     3181 cactgagatt tggggcccgt gtagcaaggt cccgaagccc tgagtgggct gtggacacag
     3241 gacgggtgga ggaaaagttg tccagaaact tctgtgagac agggcagctg aggcccaggt
     3301 gttactagtc cgcttgacct tcctctttcc taactgctgg cctttggatc caaatgggat
     3361 ttccctggct actgccagta cttggccatc tggcttccaa taatacaatg gttattcaag
     3421 ttcaagtgat gaacttctgg tgactctcac tctacagagt caaccactag tgcatatttg
     3481 ggaaatccag gcttccacca tgagtggatt ccttaagcaa aaaggaaaac aaaaagcaaa
     3541 ataggttata ttttaaaata tagaaaggca ataagttgca tcaaggttat acaggaaaga
     3601 attcaaagtg tatccttgaa taggtttctg gagttggagt tctaaactct gatttgtaac
     3661 ttggactttc gaattgcaaa tggcaataac tagtaagtta tcagcaataa taaatttagc
     3721 attaaatttg agtataatgt tctgtttttg cactcctcat atagtgcata tgtattcaga
     3781 caagtggata gtgttaaagt cctgttattt tctttggaat tcaatgtagt tgtgaatcaa
     3841 aattaagaga agggaagttt cattagcaat gagatttaga attaagggca tttggaataa
     3901 gcccagtttc ccctaaatta cccttagttt attaatatca atgttcagat tcctgactca
     3961 tttatacatc tgtttccatg tggcagggac attctgatat ttaatgagca atgctttgag
     4021 tttgtagaag ctttcaagtc ttccagatga ttgtcaacaa cagaaaaggc ttattgaatt
     4081 ccatcttgct atgcaagttt tatcagatga tcaaatgaca gatctgatgc atctcatcgt
     4141 atgtatgaca ttttcaaact aagtcttaac ttctcaagta cattgtagta gctaattcag
     4201 gggaggggaa aggatgaccc aggttttaga ttgactattt tttgagctat ggagctcctt
     4261 tgagactgct gtccagatca gctcgttgct actggtattc gaagattctc aggagtccaa
     4321 gttgtacttt tgcttgtagc ctaatttaaa aatgagatgt tttgcatctg agcaaaaacc
     4381 ttttgctgga tacaggaaaa ggctggactc tgatctagtt atcttttgat tacagcaaca
     4441 gctctgggtg agaatagaat ttatagagga ataatctgtg aagccataga aagaaaccct
     4501 aaattaatct agtgagtata tggcctctca ccattttagg aggcaccaga ttcatttgca
     4561 ctattaggaa tgctagtttt gtgcaaaaat aaatgcctta cctgtttccc cccacattta
     4621 ggttgaaaag ctttcaaatg ttccaagtta tgctgaacca aaaacaaata aaacaaaatg
     4681 aaaaaaaaaa aaaaaaataa taataaaaaa tttcccccac aaaaacataa caaaaaaaaa
     4741 aaaagcccac acgtttaatt actgctttga aatgcaatgg tatagagcac ggtttctgac
     4801 agtgtaatga tagctttgta agttagttca tgtcatgctg ggaactctgt atgaggcggc
     4861 cacaggcagc agcagcccac ctacctaccc acttgcattc tattagtatt gagctttttt
     4921 gtttgtttgt ttgttctttt gaatcttcct tgtgcatcct gaccaagaaa tatctttgat
     4981 tatgatcaat gtattatgtc aaaatgtagg ctagttgaac ttttgtaaag ttgcctggaa
     5041 tgtcatttgt taggttataa acacaaaatt taaatgaagg gttttatgtg ttgtgtacaa
     5101 atcttaatta ttttaaaatg gacagacttg tcattacatt tgtaaccttg tacagaggat
     5161 ttttcactat gtgcctagct tggtgtccat tcaactaaaa ttgaaaaaaa aaaggtgcat
     5221 gaagagttaa aatcagaagt taaacaaagt ctatgtagag atgactattt tatattacat
     5281 ggcccaatcc tgtatttatt tctaccccct ttttgaaagt atttataaaa ctagttgaag
     5341 acagctgtat ttttttgttg aactatttag tagaatttgt gcctttttgt ctgtatgtga
     5401 ataaatgctg tacattttgc aataca
//
