LOCUS       NM_001289875            4692 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus inter-alpha-trypsin inhibitor heavy chain family
            member 6 (Itih6), mRNA.
ACCESSION   NM_001289875
VERSION     NM_001289875.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL672282.9.
            
            On Mar 15, 2022 this sequence version replaced NM_001289875.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN01164137,
                              SAMN01164138 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            inferred exon combination        :: based on alignments, homology
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-146               AL672282.9         70589-70734
            147-301             AL672282.9         71699-71853
            302-412             AL672282.9         81169-81279
            413-660             AL672282.9         83591-83838
            661-830             AL672282.9         86688-86857
            831-947             AL672282.9         89871-89987
            948-1119            AL672282.9         91455-91626
            1120-2929           AL672282.9         92082-93891
            2930-3066           AL672282.9         94003-94139
            3067-3159           AL672282.9         95778-95870
            3160-3195           AL672282.9         96979-97014
            3196-3309           AL672282.9         97234-97347
            3310-3687           AL672282.9         98778-99155
            3688-4692           AL672282.9         100393-101397
FEATURES             Location/Qualifiers
     source          1..4692
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 68.46 cM"
     gene            1..4692
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /note="inter-alpha-trypsin inhibitor heavy chain family
                     member 6"
                     /db_xref="GeneID:634882"
                     /db_xref="MGI:MGI:2685232"
     exon            1..146
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..3899
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /note="inter-alpha (globulin) inhibitor H5-like,
                     pseudogene"
                     /codon_start=1
                     /product="inter-alpha-trypsin inhibitor heavy chain H6
                     precursor"
                     /protein_id="NP_001276804.2"
                     /db_xref="GeneID:634882"
                     /db_xref="MGI:MGI:2685232"
                     /translation="MSEWRYLSWVSILLTILLDLTHQGPHGSASSSSKLLMMSYSIRS
                     TVVSRYANTLVTSVLFNPHDEAHEAIFDLNLPRIAFISNFTMTIDDKIYVAEIKEKHQ
                     AKKMYEKAYQQGKTAAHVGIRDRESENFRISTMLAAGTKATFALAYEELLQRHQGRYQ
                     LVVGLRPGQLVRKLNVEITVSERTGIAYVHIPPLRTSQVCTNNQTSEGDLPPSTRIQR
                     GETCVHITFSPTLRDQSAFSSSGIMADFTIHYDVSMEDIIGDVQVYGGYFIHYFAPRG
                     LQPLEKNVVFVIDVSGSMFGTKLQQTKKAMDTILSDLQASDSFNIITFSDTVNIWKAE
                     GSIQATVQNIHSAKNYVSRMEADGWTDINAALLAAASVLNHSNQEPGKGRGVGQIPLI
                     MFLTDGEPTAGETTPSVILSNIRQALAHRVSLFSLAFGDDADFSLLRRLSLENQGEAR
                     RIYEDADAALQLEGLYAEISRPLLADVHLDYLGGWVGASSRAHFPNYFHGSELVVAGK
                     VQPGEQELGIHLAARGPNGHLLVAHHSEEASNSSQKAFGCPGKPALNVTHFIHRLWAY
                     VTIGELLKARFQAKDTTTRRLLAAKALNLSLEYNFVTPLTSLVVVHLEKTNEEAMTQP
                     STTAKTSTVTPSSSNRLGLGTGTAQPASVLKVFSKSRPTKPTSTIIAPTMKVTSSKEL
                     GALGWWSNSLTTSVQPKPQIPGQDSSTLALPTLKMKPLAHVPSNSNDPLPRKPSTSTH
                     QNPGITSLVNSGTYILPLNPVSPSQPKGGTMKHFNSFSPFKLPASSDAHPTPDTPSYL
                     QPVSQEPISQSSQSVPQPKYISTFQIPKHPLHLSSKDLAPKTSPNLPHSKPGNVLPKS
                     PKIPSSHEPSVSSHQTSPSLLLSKSRTPTTYSTQIPLPARPRPLVPQSLNTFSNTLSS
                     STSPSSTVATSIPGEPLPSPFTPTLTSLLPTARRWHQQDPLLGPKSTSTLPEAITLHL
                     LPEKLHLLSESVEESKFVESLNPPVFYTFLTPDKDGSSHWNGNSERTLGVAEHDMNSE
                     ESSKELVKGTWPGIFIFSSSVDGDPHFVIHIPHSEEKICFTLDGRPGDLLKLIDDPKA
                     GLHVSGQLLGAPSRPSHKDQTRTYFHIITITSDKPRAYNITISRSSISVQGESTLSLS
                     WNQRALVKKPHLELHVASAALLTVRLGPHLNFFILRHQYRHPSTLQLPHLGFYVANGS
                     GLSPSARGLMGQFQYTDIRLVTGPSGSYLQKHHGLDVPVVLGKRLLKESPRLLPRWTS
                     CWIVKRSHVERLLGQPYLAYVL"
     exon            147..301
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            302..412
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            413..660
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            661..830
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            831..947
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            948..1119
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            1120..2929
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            2930..3066
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            3067..3159
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            3160..3195
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            3196..3309
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            3310..3687
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
     exon            3688..4692
                     /gene="Itih6"
                     /gene_synonym="Gm386; Itih5l; Itih5l-ps"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agacattctg gatgagagca gcaggcccag ccagaagtgg taccatgtct gaatggaggt
       61 acctcagctg ggtcagcatt ctgctgacca tcctcctaga tctaacacac cagggacctc
      121 atggctctgc ctcatcaagc agcaagttgt tgatgatgag ctactccata cgttccaccg
      181 tggtgtctcg ttatgcaaac actttggtca cctctgtcct cttcaatcca catgatgaag
      241 ctcatgaagc catttttgac ctgaatctac cccgcattgc ctttatctct aatttcacaa
      301 tgaccatcga cgataaaatc tatgttgcag aaatcaagga aaaacatcag gcaaagaaaa
      361 tgtatgagaa agcctatcag caaggaaaga cagctgctca tgtgggcatc agggaccggg
      421 aatcagaaaa ctttcgaatc tccactatgc tggcagcagg cacaaaggca acttttgccc
      481 tggcctatga agaactgcta cagcgacacc agggccggta ccagttggtg gtgggcctga
      541 ggcctggaca gttggtgagg aagctgaatg tagaaatcac tgtgtcagaa aggacaggca
      601 tcgcctatgt gcacatacct cctctgagaa ccagccaagt gtgcaccaac aaccaaacaa
      661 gtgagggtga cttgccccca tccaccagga tacagagggg agagacctgt gtccacatca
      721 ccttctcccc aacactgcga gaccaatctg ccttctccag ctcaggaatc atggccgatt
      781 tcaccatcca ctatgatgtg agcatggagg acatcattgg agacgtgcag gtctatggtg
      841 gctattttat tcattacttt gcccccagag gcctccagcc cctagagaag aatgtggtgt
      901 ttgttattga cgtgagcggc tctatgtttg gaactaagtt gcaacagact aaaaaggcca
      961 tggatacgat cctcagtgat cttcaagcca gtgactcctt caacatcatt accttttctg
     1021 acacagttaa catctggaaa gctgaaggct caatccaggc cactgtccag aatatccata
     1081 gtgccaaaaa ctacgtgagt cgcatggaag cggatggctg gacggacatc aatgcagctc
     1141 tgctggcagc agcttcagtg ctgaaccata gcaaccagga gcctggaaag ggccgtggtg
     1201 tggggcagat tcctcttatc atgttcctga cagatgggga gcccacagcc ggtgagacaa
     1261 ctcccagtgt gattctttca aacatccgtc aggcactggc ccacagggta tctcttttca
     1321 gcttggcctt tggagatgat gctgacttct cactgctgcg tcgtttgtcc ctggagaacc
     1381 agggagaagc aagacgcata tatgaggatg ctgatgcagc cctgcaacta gagggtctct
     1441 atgcagagat ttccaggcct ctcctggcag acgtgcactt agactacttg ggtggctggg
     1501 ttggggcttc ctctagggcc catttcccta actattttca tggctctgag ctggtggtgg
     1561 ctggcaaggt gcagccaggt gagcaggaac tgggcatcca cttggcagcc cgtggcccaa
     1621 atggtcatct tcttgtggcc caccatagtg aagaagccag caacagcagc cagaaagcct
     1681 ttggttgccc agggaaacct gccctcaatg tgacccactt tatccaccgc ctgtgggcct
     1741 atgtcactat tggtgagctg ctgaaggcac gcttccaagc caaggacacc acaactcgcc
     1801 gtctgttggc cgccaaagcc ctcaacctat cccttgaata caactttgtc acacctctga
     1861 cttcactggt tgtggtgcac ctcgagaaga ccaatgagga agccatgacc cagccatcca
     1921 ctacagccaa gacaagcaca gtcacaccct catccagcaa caggcttgga ctaggaacag
     1981 gcacagctca gccagcctca gtgctcaagg tcttttccaa atcaagaccc acaaaaccaa
     2041 cctcaactat tattgcccct acaatgaagg tgaccagttc caaggagcta ggggcactgg
     2101 gttggtggtc taatagccta acaacttcag tacaaccaaa accccaaatt ccaggccaag
     2161 attccagcac cttggcactg ccaactttga agatgaaacc tcttgcccat gtgccttcaa
     2221 attctaatga cccattgcct cggaagccca gtacttcaac acaccagaat cctggcatca
     2281 catcgctggt taattctggg acatatatcc tgccattgaa tcctgtgagc ccttcccagc
     2341 ccaaaggtgg caccatgaaa cattttaatt cattttctcc tttcaaactc cctgcttcat
     2401 cagatgccca ccctacacca gataccccat cataccttca acctgtatca caggaaccta
     2461 tatcacagtc atcccaaagt gtgccacagc ccaaatatat ctccacattt cagataccca
     2521 aacacccatt acacctcagc tccaaagatc ttgctcccaa gacttcccca aatttaccac
     2581 actctaaacc agggaatgtc ttacccaagt ctcctaaaat cccttcatct catgaaccta
     2641 gtgtctcatc tcaccaaacg tctcctagct tactactttc caagtccaga acaccaacta
     2701 cctatagcac ccaaatccca ctgcctgcta gacccaggcc actagttcct cagagcctca
     2761 acacattctc aaatacactc tcaagttcca caagtcccag cagcactgtg gctacctcta
     2821 ttcctgggga gcctctccct tctcccttta cccctactct gacctctctg ctgcccactg
     2881 caagacgctg gcatcagcaa gacccgctgc taggacccaa gagcaccagc actctcccgg
     2941 aagccatcac tcttcacctt ctcccagaga aactccacct gctgtcagag tcagtggaag
     3001 agtccaaatt cgtggagtcc ttgaacccac cagtcttcta taccttcctc actcctgaca
     3061 aagatggaag ttcacactgg aatggcaatt ctgagagaac tctgggagtt gctgaacatg
     3121 acatgaactc tgaggaaagt tctaaggagc tggtaaaagg cacatggcca ggcatcttca
     3181 tcttctcgtc ctctgtggat ggagaccccc actttgtgat tcacattcct cactcagaag
     3241 agaagatctg cttcacatta gatggtcgcc caggggacct cttgaagctc atagatgacc
     3301 ccaaggcagg gctgcatgta agtggccagt tgcttggagc accatcaaga ccaagtcata
     3361 aggaccagac ccggacatac tttcatatta tcacaatcac ttcagataaa ccccgggcct
     3421 acaacattac aataagtcga agttctatat ctgtgcaagg tgagagcacc ttgagcttat
     3481 cctggaacca acgtgccctg gtgaagaagc cccacctgga gctccatgtg gcttctgcag
     3541 cccttctcac cgtccgcctt gggccccacc tcaacttctt catccttcgt caccagtaca
     3601 gacaccccag cacactacag ctaccccatt tggggttcta tgtggccaat ggctcaggcc
     3661 tcagcccctc agcccgtggc ctgatgggac agtttcaata cacagacatc cggctggtaa
     3721 caggaccttc tgggtcttat ttacagaagc accatggcct ggacgtgcca gtggtactag
     3781 gcaagaggct gctgaaagag tcaccaaggc tgcttccccg ctggacttca tgctggatcg
     3841 tgaagcgctc tcatgtggaa aggctgctgg gtcagcccta ccttgcctat gttctgtgat
     3901 ggctcctgaa cccagagatc cagaggctat ggcatggagt caaccatggc acaggcctgg
     3961 gtccgtgggg atgtacataa tggatgtata cacatatgct aagggacaaa tatatcagga
     4021 tacacaaaga tacacaaaac tgagcagaac tttggcccta aaagtgttag tattctgttt
     4081 gccttgttta tagtctctat ttcttccaaa ttttcatgac ccctgggagt gactttcttt
     4141 ttatattgag aatttcacgc gtgtatccag tgtattttga tcatatcaaa tcccctatat
     4201 ctccttctat tcatcccaga atcccccacc cccactcagt acccccttca caacttcatc
     4261 ttctcttcgt aattcactgt catttttaaa acccaaacct cactgagtga ctggttctgc
     4321 cttggaattt ccctaataat ctaccatctt agccatcgct ggacttctgt gtgtattcat
     4381 ccttctgtgt ggggcatgcc tcctttggtt tatctaggtg aactctcttc atctttcaaa
     4441 tcttacttat cacttcccct agaaggcact ccctcgcccc tccataaggt tgaatttggt
     4501 gcctacttaa agtcccctcc gagctcacag catttttata ctgtgtgatg atcatgtttg
     4561 ctcatctgga tcccagcttg aactgtgagc tcctggagag caagaatctg ttctgattcc
     4621 tctgcatagc caaagttcat ggccatggta tatgcttaat caatatttgt agaataaatg
     4681 aatgaacaag aa
//
