LOCUS       XM_036156348            4069 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus integrin alpha E, epithelial-associated
            (Itgae), transcript variant X1, mRNA.
ACCESSION   XM_036156348
VERSION     XM_036156348.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4069
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..4069
                     /gene="Itgae"
                     /gene_synonym="A530055J10; alpha-E1; alpha-M290; aM290;
                     CD103"
                     /note="integrin alpha E, epithelial-associated; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 ESTs, 17 long SRA reads, and 98% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     12 samples with support for all annotated introns"
                     /db_xref="GeneID:16407"
                     /db_xref="MGI:MGI:1298377"
     CDS             110..3610
                     /gene="Itgae"
                     /gene_synonym="A530055J10; alpha-E1; alpha-M290; aM290;
                     CD103"
                     /codon_start=1
                     /product="integrin alpha-E isoform X1"
                     /protein_id="XP_036012241.1"
                     /db_xref="GeneID:16407"
                     /db_xref="MGI:MGI:1298377"
                     /translation="MKWLFHTLLCMASLKPQGAFNLDVDWAWVTALQPGAPAVLSSLL
                     HQDPSNNQTCLLVARRSSNRNTAALYRCAISISPDEIACQPVEHICMPKGRYQGVTLV
                     GNHNGVLVCIQVQARKFRSLNSELTGACSLLTPNLDLQAQAYFSDLEGFLDPGAHVDS
                     GDYCRSKGGSTGEEKKSARRRRTVEEEDEEEDGTEIAIVLDGSGSIEPSDFQKAKNFI
                     STMMRNFYEKCFECNFALVQYGAVIQTEFDLQESRDINASLAKVQSIVQVKEVTKTAS
                     AMQHVLDNIFIPSRGSRKKALKVMVVLTDGDIFGDPLNLTTVINSPKMQGVVRFAIGV
                     GDAFKNNNTYRELKLIASDPKEAHTFKVTNYSALDGLLSKLQQHIVHMEGTVGDALQY
                     QLAQTGFSAQILDKGQVLLGTVGAFNWSGGALLYSTQNGRGCFLNQTAKEDSRTVQYS
                     YLGYSLAVLHKAHGVSYVAGAPRHKLRGAVFELRKEDREEDAFVRRIEGEQMGSYFGS
                     VLCPVDIDMDGTTDFLLVAAPFYHIRGEEGRVYVYQVPEQDASFSLAHTLSGHPGLTN
                     SRFGFAMAAVGDINQDKFTDVAIGAPLEGFGAGDGASYGSVYIYNGHSGGLYDSPSQI
                     RASSVASGLHYFGMSVSGGLDFNGDGLADITVGSRDSAVVLRSRPVVDLTVSMTFTPD
                     ALPMVFIGKMDVKLCFEVDSSGVASEPGLREMFLNFTVDVDVTKQRQRLQCEDSSGCQ
                     SCLRKWNGGSFLCEHFWLISTEELCEEDCFSNITIKVTYEFQTSGGRRDYPNPTLDHY
                     KEPSAIFQLPYEKDCKNKVFCIAEIQLTTNISQQELVVGVTKEVTMNISLTNSGEDSY
                     MTNMALNYPRNLQFKKIQKPVSPDVQCDDPKPVASVLVMNCKIGHPILKRSSVNVSVT
                     WQLEESVFPNRTADITVTISNSNEKSLARETRSLQFRHAFIAVLSRPSVMYMNTSQSP
                     SDHKEFFFNVHGENLFGAVFQLQICVPIKLQDFQIVRVKNLTKTQDHTECTQSQEPAC
                     GSDPVQHVKEWHSVVCAITSNKENVTVAAEISVGHTKQLLRDVSELPILGEISFNKSL
                     YEGLNAENHRTKITVIFLKEEETRSLPLIIGSSIGGLLVLVVIIAILFKCGFFKRKYQ
                     QLNLESTRRAQLKADSLLQD"
ORIGIN      
        1 cttctgtctc cacctcctgg cctcccctgc aggggaaggg aagctgagta ctttctgagg
       61 tccttctgtg tcgccccact cagctcacac agctgcatct gctccagcta tgaagtggct
      121 cttccatacc cttctctgca tggccagcct gaagccccag ggagccttca atttggatgt
      181 ggactgggcc tgggtcacag cactccagcc aggtgcaccg gctgtgctca gctcccttct
      241 gcatcaagac cccagcaaca accagacctg cctcctggta gccagacgca gctccaacag
      301 gaatacagcc gccctgtatc gatgcgctat atccatcagt ccagatgaaa ttgcttgcca
      361 gccagtggag cacatctgta tgccaaaggg caggtaccag ggagtgacat tggtcgggaa
      421 ccacaatggt gttttggtgt gcattcaggt acaggcccgg aagttccgca gcctcaactc
      481 agagctcacg ggtgcctgca gcctactcac ccccaatttg gacctccagg cccaagccta
      541 cttctctgac ctcgaagggt tcctggatcc aggagcacat gtggactctg gtgactactg
      601 tagaagcaaa ggaggcagca caggggagga gaagaagtca gccaggagac gccggacagt
      661 ggaggaggaa gacgaggagg aagatggcac tgagatcgct attgtcctgg atggctcagg
      721 aagcattgaa ccctcagact tccagaaggc caaaaatttc atctctacca tgatgaggaa
      781 cttctatgag aagtgttttg agtgcaactt tgccctggtg cagtatgggg ccgtgatcca
      841 gactgagttt gatcttcaag agagccggga cattaacgcc tcccttgcca aagttcagag
      901 catcgttcaa gtgaaggaag tcactaagac cgcctcagcc atgcagcatg tcctagacaa
      961 tatcttcatt ccaagccgtg gctccagaaa aaaagcattg aaggtcatgg tggtacttac
     1021 tgatggtgac atatttgggg accctctcaa tcttacgact gtcatcaact ccccaaagat
     1081 gcagggtgtt gtgcgctttg ccattggggt gggtgatgca ttcaagaata acaacactta
     1141 cagagaactg aagctgattg cctcagaccc caaagaggcc cacactttca aggtgaccaa
     1201 ctactcagct ctggatgggc tgctgagcaa gctgcaacaa cacatcgttc atatggaagg
     1261 tacagttgga gatgcccttc aatatcaact cgcacagact ggtttcagtg cccagatcct
     1321 ggacaagggg caggtgttgc ttggcactgt gggggccttt aactggtctg ggggtgcgct
     1381 gctctacagc acacagaatg gccggggctg cttcctaaac cagacagcca aggaggactc
     1441 caggactgta cagtacagct acctaggtta ctcccttgcg gtgctacaca aggcccacgg
     1501 cgtctcttac gtggcagggg ctccaaggca caagctccgt ggggctgtgt ttgagctccg
     1561 gaaggaggac agagaggagg atgcctttgt gcgacggata gaaggagagc agatggggtc
     1621 ctactttggc tctgtgctgt gccctgtgga tatcgacatg gatgggacca cagattttct
     1681 actggtggct gctccatttt accacatccg tggagaagaa ggcagagtct atgtgtacca
     1741 ggtgcctgag caggatgctt ccttctcctt ggcacacaca ctgagtgggc accctgggct
     1801 caccaatagc cgctttggct ttgccatggc agctgtgggg gatatcaacc aagacaaatt
     1861 cacagatgtg gccattgggg cccctctgga gggttttggg gcaggtgacg gggccagcta
     1921 tggcagcgtg tacatctaca acggacactc aggtggcttg tatgacagtc cttcccagat
     1981 ccgagcctcc tctgtggcct cgggactcca ctacttcggc atgtctgtgt ccggtgggtt
     2041 agatttcaat ggcgatggcc ttgccgatat cacagttggc tctcgggact cggcggttgt
     2101 gctccgctca cgccctgtgg ttgacctgac cgtatctatg acctttaccc ccgatgcact
     2161 gcccatggtc ttcataggca agatggatgt aaaactgtgt tttgaagttg actcttcagg
     2221 cgtagcttct gagccaggcc ttagagagat gttcctcaac tttacggtgg atgtggatgt
     2281 gaccaagcaa aggcagaggc tgcagtgtga ggactcgagc ggttgtcaga gctgcctcag
     2341 gaagtggaac ggagggtcct ttctgtgtga acacttctgg ctcatctcca cagaggagct
     2401 ttgtgaggag gactgcttct ccaacatcac catcaaggtc acctacgagt tccagacgtc
     2461 tgggggaagg agggactacc ccaaccccac cctggaccac tacaaggaac cctctgccat
     2521 cttccagctg ccctacgaga aggactgcaa gaacaaagtg ttctgcatcg ctgagatcca
     2581 gctgaccacc aacatctccc agcaggaact ggtggtgggc gtcacaaagg aggtgaccat
     2641 gaacatcagc ctgactaact ctggagagga ttcctacatg acaaacatgg ctctcaatta
     2701 tcccagaaac ttacagttta agaagataca aaagccagta tctccagatg ttcagtgtga
     2761 tgaccccaag ccagttgctt ctgtcctggt catgaactgc aagattggtc accccatact
     2821 caagagatca tctgtgaatg tctcagtaac ttggcagcta gaggagagtg tctttccaaa
     2881 taggacagca gatatcactg tgaccatctc caattccaat gagaagtctt tggccagaga
     2941 gacacgcagc cttcaattca gacatgcctt cattgcagtt ctttccagac cctcagtgat
     3001 gtacatgaac acaagccaaa gcccttctga ccacaaagaa ttcttcttca atgtgcatgg
     3061 ggagaatctt tttggagctg tattccagtt gcaaatttgt gtccccatca aattacaaga
     3121 tttccagatt gtaagagtga agaatctgac aaagactcag gaccacactg agtgcaccca
     3181 gagtcaagag cctgcgtgtg gaagcgatcc tgtgcagcat gtaaaagaat ggcattcagt
     3241 ggtctgtgct atcacatcta ataaagaaaa tgtaaccgtg gccgcagaga tctccgtggg
     3301 ccacactaag cagttactaa gagatgtatc tgaactgccg atccttggtg aaatatcttt
     3361 caacaaatct ctctatgagg ggctgaatgc agagaaccac aggacgaaga tcactgtcat
     3421 cttcctgaaa gaggaggaga cacgctcttt gcctctcatc attggcagca gcatcggagg
     3481 cctcctggtc ttggttgtga ttatagccat tttgttcaag tgtggctttt tcaaaagaaa
     3541 atatcaacaa ctgaacttgg agagcacaag gagggcccag ctgaaggctg acagtctgct
     3601 ccaagattag ccccctgctt cctcaccgga aggagggagt ttgagccagt cggaagccgg
     3661 gatgccccct atcggggccc cttactctcc ttaggacgat caagcaacat caaagaactg
     3721 tagagtgttg ttcatagcca cacactatgc ccacagtgtc ttgtgaattg agcaaaaggg
     3781 aaacttagga tgtgtgctat taaatacatt tacttttaca gcagtgcctt taatgagcac
     3841 ggttcccagt ttgccatgcg ttttgatgac tgatagacca aagtcttatt cctattaaaa
     3901 tattaattat atcatttttt tatgttgttt gagacatagt ccttatttgt atatagccct
     3961 ggctgccctg gaactcacta gatagaccag gctggccttg aactcgcaga gatctgcctg
     4021 cctctgccaa ctgagtgcta agattaaagg ggagcaccat tgtgcccaa
//
