LOCUS       XM_036153200            3750 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus integrin, alpha D (Itgad), transcript
            variant X1, mRNA.
ACCESSION   XM_036153200
VERSION     XM_036153200.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..3750
                     /gene="Itgad"
                     /gene_synonym="Cd11d"
                     /note="integrin, alpha D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 7
                     ESTs, 2 long SRA reads, 1 Protein, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:381924"
                     /db_xref="MGI:MGI:3578624"
     CDS             41..3637
                     /gene="Itgad"
                     /gene_synonym="Cd11d"
                     /codon_start=1
                     /product="integrin alpha-D isoform X1"
                     /protein_id="XP_036009093.1"
                     /db_xref="GeneID:381924"
                     /db_xref="MGI:MGI:3578624"
                     /translation="MHCSAMVRGVVILLCGWALASCHGSNLDVEKPVVFKEDAASFGQ
                     TVVQFGGSRLVVGAPLEAVAVNQTGQLYDCAPATGVCQPILLHIPLEAVNMSLGLSLV
                     ADTNNSQLLACGPTAQRACAKNMYAKGSCLLLGSSLQFIQAIPATMPECPGQEMDIAF
                     LIDGSGSIDQSDFTQMKDFVKALMGQLASTSTSFSLMQYSNILKTHFTFTEFKSSLSP
                     QSLVDAIVQLQGLTYTASGIQKVVDSNRLLLLRVWSALKPGCHYNTHMPWWVWQRVRF
                     SWKELFHSKNGARKSAKKILIVITDGQKFRDPLEYRHVIPEAEKAGIIRYAIGVGDAF
                     REPTALQELNTIGSAPSQDHVFKVGNFVALRSIQRQIQEKIFAIEGTESRSSSSFQHE
                     MSQEGFSSALSMDGPVLGAVGSFSWSGGAFLYPSNMRSTFINMSQENEDMRDAYLGYS
                     TALAFWKGVHSLILGAPRHQHTGKVVIFTQESRHWRPKSEVRGTQIGSYFGASLCSVD
                     MDRDGSTDLVLIGVPHYYEHTRGGQVSVCPMPGVRSRWHCGTTLHGEQGHPWGRFGAA
                     LTVLGDVNGDSLADVAIGAPGEEENRGAVYIFHGASRQDIAPSPSQRVTGSQLFLRLQ
                     YFGQSLSGGQDLTQDGLVDLAVGAQGHVLLLRSLPLLKVGISIRFAPSEVAKTVYQCW
                     GRTPTVLEAGEATVCLTVRKGSPDLLGDVQSSVRYDLALDPGRLISRAIFDETKNCTL
                     TRRKTLGLGDHCETMKLLLPDCVEDAVTPIILRLNLSLAGDSAPSRNLRPVLAVGSQD
                     HVTASFPFEKNCKQELLCEGNLGVSFNFSGLQVLEVGSSPELTVTVTVWNEGEDSYGT
                     LIKFYYPAELSYRRVTRAQQPHPYPLRLACEAEPTGQESLRSSSCSINHPIFREGAKA
                     TFMITFDVSYKAFLGDRLLLRASASSENNKPETSKTAFQLELPVKYTVYTVISRQEDS
                     TKHFNFSSSHGERQKEAEHRYRVNNLSPLTLAISVNFWVPILLNGVAVWDVTLRSPAQ
                     GVSCVSQREPPQHSDLLTQIQGRSVLDCAIADCLHLRCDIPSLGTLDELDFILKGNLS
                     FGWISQTLQKKVLLLSEAEITFNTSVYSQLPGQEAFLRAQVSTMLEEYVVYEPVFLMV
                     FSSVGGLLLLALITVALYKVHSNCGPGSDNVLLTGLKRWLSVQEYWLLFWKS"
ORIGIN      
        1 ggtttagcac cgtgcaggct ctacagctct ctacttccta atgcactgct cagctatggt
       61 ccgtggagtt gtgatcctcc tgtgtggctg ggccctggct tcctgtcatg ggtctaacct
      121 ggatgtggag aagcccgtcg tgttcaaaga ggatgcagcc agcttcggac agactgtggt
      181 gcagtttggt ggatctcgac tcgtggtggg agcccctctg gaggcggtgg cagtcaacca
      241 aacaggacag ttgtatgact gtgcgcctgc cactggcgtg tgccagccca tcttactgca
      301 cattccccta gaggcagtga acatgtccct gggcctgtct ctggtggctg acaccaataa
      361 ctcccagttg ctggcttgtg gtccaactgc acagagagct tgtgcaaaga acatgtatgc
      421 aaaaggttcc tgcctccttc tgggctccag cttgcagttc atccaggcaa tccctgctac
      481 catgccagag tgtccaggac aagagatgga cattgctttc ctgattgatg gctccggcag
      541 cattgatcaa agtgacttta cccagatgaa ggacttcgtc aaagctttga tgggccagtt
      601 ggcgagcacc agcacctcgt tctccctgat gcaatactca aacatcctga agactcattt
      661 taccttcacg gaattcaaga gcagcctgag ccctcagagc ctggtggatg ccatcgtcca
      721 gctccaaggc ctgacgtaca cagcctcggg catccagaaa gtggtagaca gcaacaggct
      781 ccttcttcta cgtgtctggt cagcactgaa gccaggttgc cactacaaca ctcacatgcc
      841 atggtgggtc tggcagaggg tacggttctc ctggaaagag ctatttcata gcaagaatgg
      901 ggcccgaaaa agtgccaaga agatactaat tgtcatcaca gatgggcaga aattcagaga
      961 ccccctggag tatagacatg tcatccctga agcagagaaa gctgggatca ttcgctatgc
     1021 tataggggtg ggagatgcct tccgggaacc cactgcccta caggagctga acaccattgg
     1081 ctcagctccc tcgcaggacc acgtgttcaa ggtgggcaat tttgtagcac ttcgcagcat
     1141 ccagcggcaa attcaggaga aaatctttgc cattgaagga accgaatcaa ggtcaagtag
     1201 ttcctttcag cacgagatgt cacaagaagg tttcagctca gctctctcaa tggatggacc
     1261 agttctgggg gctgtgggaa gcttcagctg gtctggaggt gccttcttgt acccctcaaa
     1321 tatgagatcc accttcatca acatgtctca ggagaacgag gatatgaggg acgcttacct
     1381 gggttactcc accgcactgg ccttttggaa gggggtccac agcctgatcc tgggggcccc
     1441 tcgccaccag cacacgggga aggttgtcat ctttacccag gaatccaggc actggaggcc
     1501 caagtctgaa gtcagaggga cacagatcgg ctcctacttt ggggcatctc tctgttctgt
     1561 ggacatggat agagatggca gcactgacct ggtcctgatt ggagtccccc attactatga
     1621 gcacacccga ggggggcagg tgtcggtgtg ccccatgcct ggtgtgagga gcaggtggca
     1681 ttgtgggacc accctccatg gggagcaggg ccatccttgg ggccgctttg gggcggctct
     1741 gacagtgcta ggggacgtga atggggacag tctggcggat gtggctattg gtgcacccgg
     1801 agaggaggag aacagaggtg ctgtctacat atttcatgga gcctcgagac aggacatcgc
     1861 tccctcgcct agccagcggg tcactggctc ccagctcttc ctgaggctcc aatattttgg
     1921 gcagtcatta agtgggggtc aggaccttac acaggatggc ctggtggacc tggccgtggg
     1981 agcccagggg cacgtgctgc tgcttaggag tctgcctttg ctgaaagtgg ggatctccat
     2041 tagatttgcc ccctcagagg tggcaaagac tgtgtaccag tgctggggaa ggactcccac
     2101 tgtcctcgaa gctggagagg ccaccgtctg tctcactgtc cgcaaaggtt cacctgacct
     2161 gttaggtgat gtccaaagct ctgtcaggta tgatctggcg ttggatccgg gccgtctgat
     2221 ttctcgtgcc atttttgatg agacgaagaa ctgcactttg acccgaagga agactctggg
     2281 gcttggtgat cactgcgaaa caatgaagct gcttttgcca gactgtgtgg aggatgcagt
     2341 gacccctatc atcctgcgcc ttaacttatc cctggcaggg gactctgctc catccaggaa
     2401 ccttcgtcct gtgctggctg tgggctcaca agaccatgta acagcttctt tcccgtttga
     2461 gaagaactgt aagcaggagc tcctgtgtga ggggaacctg ggcgtcagct tcaacttctc
     2521 aggcctgcag gtcttggagg taggaagctc cccagagctc actgtgacag taacagtttg
     2581 gaatgagggt gaggacagct atggaacctt aatcaagttc tactacccag cagagctatc
     2641 ttaccgacgg gtgacaagag cccagcaacc tcatccgtac ccactacgcc tggcatgtga
     2701 ggctgagccc acgggccagg agagcctgag gagcagcagc tgtagcatca atcaccccat
     2761 cttccgagaa ggtgccaagg ccaccttcat gatcacattt gatgtctcct acaaggcctt
     2821 cctgggagac aggttgcttc tgagggccag cgcaagcagt gagaataata agcctgaaac
     2881 cagcaagact gccttccagc tggagcttcc ggtgaagtac acggtctata ccgtgatcag
     2941 taggcaggaa gattctacca agcatttcaa cttctcatct tcccacgggg agagacagaa
     3001 agaggccgaa catcgatatc gtgtgaataa cctgagtcca ttgacgctgg ccatcagcgt
     3061 taacttctgg gtccccatcc ttctgaatgg tgtggccgtg tgggatgtga ctctgaggag
     3121 cccagcacag ggtgtctcct gtgtgtcaca gagggaacct cctcaacatt ccgaccttct
     3181 gacccagatc caaggacgct ctgtgctgga ctgcgccatc gccgactgcc tgcacctccg
     3241 ctgtgacatc ccctccttgg gcaccctgga tgagcttgac ttcattctga agggcaacct
     3301 cagcttcggc tggatcagtc agacattgca gaaaaaggtg ttgctcctga gtgaggctga
     3361 aatcacattc aacacatctg tgtattccca gctgccggga caggaggcat ttctgagagc
     3421 ccaggtgtca acgatgctag aagaatacgt ggtctatgag cccgtcttcc tcatggtgtt
     3481 cagctcagtg ggaggtctgc tgttactggc tctcatcact gtggcgctgt acaaggttca
     3541 ctctaattgt ggtcctggct ctgataacgt gttattaaca gggctgaaga gatggctcag
     3601 tgttcaagag tactggttgc tcttctggaa gtcctgagtt caattcccaa caaccacatg
     3661 gtggctcaca acatctataa aggaatctga tgccctcttc tggtgtgcag acagagtact
     3721 catacctaaa taaatatgtt tttaacaaga
//
