LOCUS       XM_006507972            3870 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus integrin, alpha D (Itgad), transcript
            variant X3, mRNA.
ACCESSION   XM_006507972
VERSION     XM_006507972.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000073.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 22, 2016 this sequence version replaced XM_006507972.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3870
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="7"
     gene            1..3870
                     /gene="Itgad"
                     /gene_synonym="Cd11d"
                     /note="integrin, alpha D; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 12
                     ESTs, 7 long SRA reads, 19 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 2 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:381924"
                     /db_xref="MGI:MGI:3578624"
     CDS             41..3541
                     /gene="Itgad"
                     /gene_synonym="Cd11d"
                     /codon_start=1
                     /product="integrin alpha-D isoform X3"
                     /protein_id="XP_006508035.1"
                     /db_xref="GeneID:381924"
                     /db_xref="MGI:MGI:3578624"
                     /translation="MHCSAMVRGVVILLCGWALASCHGSNLDVEKPVVFKEDAASFGQ
                     TVVQFGGSRLVVGAPLEAVAVNQTGQLYDCAPATGVCQPILLHIPLEAVNMSLGLSLV
                     ADTNNSQLLACGPTAQRACAKNMYAKGSCLLLGSSLQFIQAIPATMPECPGQEMDIAF
                     LIDGSGSIDQSDFTQMKDFVKALMGQLASTSTSFSLMQYSNILKTHFTFTEFKSSLSP
                     QSLVDAIVQLQGLTYTASGIQKVVKELFHSKNGARKSAKKILIVITDGQKFRDPLEYR
                     HVIPEAEKAGIIRYAIGVGDAFREPTALQELNTIGSAPSQDHVFKVGNFVALRSIQRQ
                     IQEKIFAIEGTESRSSSSFQHEMSQEGFSSALSMDGPVLGAVGSFSWSGGAFLYPSNM
                     RSTFINMSQENEDMRDAYLGYSTALAFWKGVHSLILGAPRHQHTGKVVIFTQESRHWR
                     PKSEVRGTQIGSYFGASLCSVDMDRDGSTDLVLIGVPHYYEHTRGGQVSVCPMPGVRS
                     RWHCGTTLHGEQGHPWGRFGAALTVLGDVNGDSLADVAIGAPGEEENRGAVYIFHGAS
                     RQDIAPSPSQRVTGSQLFLRLQYFGQSLSGGQDLTQDGLVDLAVGAQGHVLLLRSLPL
                     LKVGISIRFAPSEVAKTVYQCWGRTPTVLEAGEATVCLTVRKGSPDLLGDVQSSVRYD
                     LALDPGRLISRAIFDETKNCTLTRRKTLGLGDHCETMKLLLPDCVEDAVTPIILRLNL
                     SLAGDSAPSRNLRPVLAVGSQDHVTASFPFEKNCKQELLCEGNLGVSFNFSGLQVLEV
                     GSSPELTVTVTVWNEGEDSYGTLIKFYYPAELSYRRVTRAQQPHPYPLRLACEAEPTG
                     QESLRSSSCSINHPIFREGAKATFMITFDVSYKAFLGDRLLLRASASSENNKPETSKT
                     AFQLELPVKYTVYTVISRQEDSTKHFNFSSSHGERQKEAEHRYRVNNLSPLTLAISVN
                     FWVPILLNGVAVWDVTLRSPAQGVSCVSQREPPQHSDLLTQIQGRSVLDCAIADCLHL
                     RCDIPSLGTLDELDFILKGNLSFGWISQTLQKKVLLLSEAEITFNTSVYSQLPGQEAF
                     LRAQVSTMLEEYVVYEPVFLMVFSSVGGLLLLALITVALYKLGFFKRQYKEMLDLPSA
                     DPDPAGQADSNHETPPHLTS"
ORIGIN      
        1 ggtttagcac cgtgcaggct ctacagctct ctacttccta atgcactgct cagctatggt
       61 ccgtggagtt gtgatcctcc tgtgtggctg ggccctggct tcctgtcatg ggtctaacct
      121 ggatgtggag aagcccgtcg tgttcaaaga ggatgcagcc agcttcggac agactgtggt
      181 gcagtttggt ggatctcgac tcgtggtggg agcccctctg gaggcggtgg cagtcaacca
      241 aacaggacag ttgtatgact gtgcgcctgc cactggcgtg tgccagccca tcttactgca
      301 cattccccta gaggcagtga acatgtccct gggcctgtct ctggtggctg acaccaataa
      361 ctcccagttg ctggcttgtg gtccaactgc acagagagct tgtgcaaaga acatgtatgc
      421 aaaaggttcc tgcctccttc tgggctccag cttgcagttc atccaggcaa tccctgctac
      481 catgccagag tgtccaggac aagagatgga cattgctttc ctgattgatg gctccggcag
      541 cattgatcaa agtgacttta cccagatgaa ggacttcgtc aaagctttga tgggccagtt
      601 ggcgagcacc agcacctcgt tctccctgat gcaatactca aacatcctga agactcattt
      661 taccttcacg gaattcaaga gcagcctgag ccctcagagc ctggtggatg ccatcgtcca
      721 gctccaaggc ctgacgtaca cagcctcggg catccagaaa gtggtgaaag agctatttca
      781 tagcaagaat ggggcccgaa aaagtgccaa gaagatacta attgtcatca cagatgggca
      841 gaaattcaga gaccccctgg agtatagaca tgtcatccct gaagcagaga aagctgggat
      901 cattcgctat gctatagggg tgggagatgc cttccgggaa cccactgccc tacaggagct
      961 gaacaccatt ggctcagctc cctcgcagga ccacgtgttc aaggtgggca attttgtagc
     1021 acttcgcagc atccagcggc aaattcagga gaaaatcttt gccattgaag gaaccgaatc
     1081 aaggtcaagt agttcctttc agcacgagat gtcacaagaa ggtttcagct cagctctctc
     1141 aatggatgga ccagttctgg gggctgtggg aagcttcagc tggtctggag gtgccttctt
     1201 gtacccctca aatatgagat ccaccttcat caacatgtct caggagaacg aggatatgag
     1261 ggacgcttac ctgggttact ccaccgcact ggccttttgg aagggggtcc acagcctgat
     1321 cctgggggcc cctcgccacc agcacacggg gaaggttgtc atctttaccc aggaatccag
     1381 gcactggagg cccaagtctg aagtcagagg gacacagatc ggctcctact ttggggcatc
     1441 tctctgttct gtggacatgg atagagatgg cagcactgac ctggtcctga ttggagtccc
     1501 ccattactat gagcacaccc gaggggggca ggtgtcggtg tgccccatgc ctggtgtgag
     1561 gagcaggtgg cattgtggga ccaccctcca tggggagcag ggccatcctt ggggccgctt
     1621 tggggcggct ctgacagtgc taggggacgt gaatggggac agtctggcgg atgtggctat
     1681 tggtgcaccc ggagaggagg agaacagagg tgctgtctac atatttcatg gagcctcgag
     1741 acaggacatc gctccctcgc ctagccagcg ggtcactggc tcccagctct tcctgaggct
     1801 ccaatatttt gggcagtcat taagtggggg tcaggacctt acacaggatg gcctggtgga
     1861 cctggccgtg ggagcccagg ggcacgtgct gctgcttagg agtctgcctt tgctgaaagt
     1921 ggggatctcc attagatttg ccccctcaga ggtggcaaag actgtgtacc agtgctgggg
     1981 aaggactccc actgtcctcg aagctggaga ggccaccgtc tgtctcactg tccgcaaagg
     2041 ttcacctgac ctgttaggtg atgtccaaag ctctgtcagg tatgatctgg cgttggatcc
     2101 gggccgtctg atttctcgtg ccatttttga tgagacgaag aactgcactt tgacccgaag
     2161 gaagactctg gggcttggtg atcactgcga aacaatgaag ctgcttttgc cagactgtgt
     2221 ggaggatgca gtgaccccta tcatcctgcg ccttaactta tccctggcag gggactctgc
     2281 tccatccagg aaccttcgtc ctgtgctggc tgtgggctca caagaccatg taacagcttc
     2341 tttcccgttt gagaagaact gtaagcagga gctcctgtgt gaggggaacc tgggcgtcag
     2401 cttcaacttc tcaggcctgc aggtcttgga ggtaggaagc tccccagagc tcactgtgac
     2461 agtaacagtt tggaatgagg gtgaggacag ctatggaacc ttaatcaagt tctactaccc
     2521 agcagagcta tcttaccgac gggtgacaag agcccagcaa cctcatccgt acccactacg
     2581 cctggcatgt gaggctgagc ccacgggcca ggagagcctg aggagcagca gctgtagcat
     2641 caatcacccc atcttccgag aaggtgccaa ggccaccttc atgatcacat ttgatgtctc
     2701 ctacaaggcc ttcctgggag acaggttgct tctgagggcc agcgcaagca gtgagaataa
     2761 taagcctgaa accagcaaga ctgccttcca gctggagctt ccggtgaagt acacggtcta
     2821 taccgtgatc agtaggcagg aagattctac caagcatttc aacttctcat cttcccacgg
     2881 ggagagacag aaagaggccg aacatcgata tcgtgtgaat aacctgagtc cattgacgct
     2941 ggccatcagc gttaacttct gggtccccat ccttctgaat ggtgtggccg tgtgggatgt
     3001 gactctgagg agcccagcac agggtgtctc ctgtgtgtca cagagggaac ctcctcaaca
     3061 ttccgacctt ctgacccaga tccaaggacg ctctgtgctg gactgcgcca tcgccgactg
     3121 cctgcacctc cgctgtgaca tcccctcctt gggcaccctg gatgagcttg acttcattct
     3181 gaagggcaac ctcagcttcg gctggatcag tcagacattg cagaaaaagg tgttgctcct
     3241 gagtgaggct gaaatcacat tcaacacatc tgtgtattcc cagctgccgg gacaggaggc
     3301 atttctgaga gcccaggtgt caacgatgct agaagaatac gtggtctatg agcccgtctt
     3361 cctcatggtg ttcagctcag tgggaggtct gctgttactg gctctcatca ctgtggcgct
     3421 gtacaagctt ggcttcttca aacgtcagta taaagagatg ctggatctac catctgcaga
     3481 tcctgaccca gccggccagg cagattccaa ccatgagact cctccacatc tcacgtccta
     3541 ggaatctact ttcctgtata tctccacaat tacgagattg gttttgcttt tgcctatgaa
     3601 tctactggca tgggaacaag ttctcttcag ctctgggcta gcctgggaaa cttcccagaa
     3661 atgatgccct acctcctgag ctgggagatt tttatggttt gcccatgtgt cagatttcag
     3721 tgctgatcca ctttttttgc aagagcagga atggggtcag cataaattta catatggata
     3781 agaactaaca caagactgag taatatgctc aatattcaat gtattgcttg tataaatttt
     3841 taaaaaataa aatgaaaatg caggtggaaa
//
