LOCUS       XM_006513269            6013 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus integrin alpha 7 (Itga7), transcript
            variant X2, mRNA.
ACCESSION   XM_006513269
VERSION     XM_006513269.5
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000076.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 21, 2020 this sequence version replaced XM_006513269.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6013
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="10"
     gene            1..6013
                     /gene="Itga7"
                     /gene_synonym="alpha7; [a]7"
                     /note="integrin alpha 7; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 28
                     ESTs, 363 long SRA reads, 4 Proteins, and 95% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 17 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:16404"
                     /db_xref="MGI:MGI:102700"
     CDS             2348..5578
                     /gene="Itga7"
                     /gene_synonym="alpha7; [a]7"
                     /codon_start=1
                     /product="integrin alpha-7 isoform X2"
                     /protein_id="XP_006513332.1"
                     /db_xref="GeneID:16404"
                     /db_xref="MGI:MGI:102700"
                     /translation="MCVPMLLVGAPQALALPGQQANRTGGLFACPLSLEETDCYRVDI
                     DRGANVQKESKENQWLGVSVRSQGPGGKIVTCAHRYESRQRVDQALETRDVIGRCFVL
                     SQDLAIRDELDGGEWKFCEGRPQGHEQFGFCQQGTAATFSPDSHYLVFGAPGTYNWKG
                     TARVELCAQGSPDLAHLDDGPYEAGGEKEQDPRLIPVPANSYLGFSIDSGKGLMRSEE
                     LSFVAGAPRANHKGAVVILRKDSASRLIPEVVLSGERLTSGFGYSLAVTDLNNDGWAD
                     LIVGAPYFFERQEELGGAVYVYMNQGGHWADISPLRICGSPDSMFGISLAVLGDLNQD
                     GFPDIAVGAPFDGDGKVFIYHGSSLGVVVKPSQVLEGEAVGIKSFGYSLSGGLDVDGN
                     HYPDLLVGSLADTAALFRARPVLHVSQEIFIDPRAIDLEQPNCADGRLVCVDIKICFS
                     YVAVPSSYSPSVALDYMLDGDTDRRLRGQVPRVTFLSRGLDDLRHQSSGTVWLKHQHD
                     RVCGDTVFQLQENVKDKLRAIVVTLSYGLRTPPLGRQAPGQELPTVAPILNAHQPSTQ
                     RTEIHFLKQGCGEDKICQSNLQLERYQFCSRISDTEFQALPMDLDGRTALFALSGQPF
                     IGLELTVTNLPSDPARPQADGDDAHEAQLLVTLPASLRYSGVRALDSVEKPLCLSNDS
                     ASHVECELGNPMKRGAQVTFYLILSTSGITIETTELEVKLLLATISEQELDPVSVRAH
                     VFIELPLSISGVATPQQLFFSGEVKGESAMRSERDVGSKVKYEVTVSNQGQSLNTLGS
                     AFLNIMWPHEIANGKWLLYPMRVELEGGQGPGKRGICSPRPNILQLDVDSRDRRRREL
                     GQPEPQEPPEKVEPSTSWWPVSSAEKRNVTLDCAQGTAKCVVFSCPLYSFDRAAVLHV
                     WGRLWNSTFLEEYMAVKSLEVIVRANITVKSSIKNLLLRDASTVIPVMVYLDPMAVVV
                     EGVPWWVILLAVLAGLLVLALLVLLLWKLGFFKRAKHPEATVPQYHAVKIPREDRQQF
                     KEEKTGTIQRSNWGNSQWEGSDAHPILAADWHPELGPDGHPVPATA"
ORIGIN      
        1 aaattggcac ttcctatggg gcaagcacaa agacagatta ggctccctcc acccccgtac
       61 catccaacag aagatgttct ctgcgattgc agcttggcac actgcagact atgagggctc
      121 tgtttgctca gggtatatca cctagatttc ctagggtgtc attttctctc ctctttttcc
      181 tcttctggca acaggccggg ctgaccaggt aattaggcag acgtggttat aaatgggggc
      241 aggctgttaa aatgtgtgtg aatgaggatg aacatctggg agataagagt tcttatctta
      301 caggattgtg agagcgagtg ggagaatgct catggctcct cccctaggaa tccaactgga
      361 gagtgctaaa gggtagttcc tccaacctcc atgtccagcc cagggcctga cctatcgtag
      421 gtgctgaata aatatcactt tcttgtctta ccagtgcctg acttaaggct tgatgtataa
      481 tgtggcatca gtaaacggtc gtgacatgaa tgatgaacat atgttgtctt tcttcctctt
      541 ccctccattt ttaaaagttt tttttttgct ttatatatat gcatattttg ctggtgtatg
      601 ttcgtgtact gcatgcgtgt gcatggtgtc tctgaagacc agaagagggt atcagatccc
      661 ctggaactgg acttaagtat tgttgtgagc cagcatgtgg gtactgggaa taaaacccag
      721 caagtgtttt gtttatttat ttatgttatc tatctatcta tctatctatc tatctatcta
      781 tctatctatc tatctgtcat tcatctattt tttaaaatta atttttaaag gttcatttat
      841 ttattttatg tatacaagta caccattgct ctcttcagag acaccagaag agagcatcag
      901 atcccatgag agatggttgt gagccaccat gtggttgctg ggaattgaat tcaggacctc
      961 tggaagagca gtcggtgctc ttaactgctg agccatctct ccagccatat catttatttt
     1021 cttgagacag ggtttttctg tgtagccctg gctgttctgg aactttcttt gtagaatggg
     1081 ccagccttga gctcacgatc tgcctgcctc accctgcata gtgctgggat taacatgtgc
     1141 accaccacat atggcctaca actgctctcg actattacat tatctctaca acccccatcc
     1201 cttctattaa aaggcctatt tttaaatttt ttaaatttat gtgtttatgt gtgtgtgtgt
     1261 gtgtgtgtgt gttcttggtg cccgtataaa attatgtgca cagaggtcat aagaaggtgt
     1321 tgaatcttct ggaactgaca ttacaggcag ttgtgaacca cctggggtga gtgctgggaa
     1381 tagaacccag gtcctctgca aaagcagcaa gccttgactg ctgaaccgtg tttcctgctg
     1441 cgtgctcccc tgaccccccg cttgacaccg gctctgatac gggatgacag ctgctaagag
     1501 acggcaagag ttgtgggaac ctttctcctc accctacacg gtctggcgca gtgccccaca
     1561 gatgcctgtc agtaatactg tctgacagtt gtgggcttca cccccaggat gggacgtgga
     1621 agagtgtggg agagaggcct tgaggctcgt cctgttgcct gccattcttg agccttttcc
     1681 tgaagagaga ggatctctgt agccatctgg gtatcagtta cttcatttta cttctcagtc
     1741 actcctggct ttggggtcca gtcctggggg acccaggcag cctccattcc cagcatagtc
     1801 cccctctggg gaagacacgt tggctgtaat catggaaaat tgttctgcca agaacgttgt
     1861 agctgagaaa atggctgagg gagaagactg ggtagggaag gagggagagg ggaagaaaaa
     1921 gctgtggatg gagaggaagg tcagatggga aaggggactc tggatgtggg gagggactca
     1981 ggtgaggtta aaggctatga gaaacccttc tcgacttcca tgccagtgtg catgactgag
     2041 tttggggttc atagggccac cggtgggtag ggtcttcgtt ggacacatgg cgaaggggaa
     2101 gcagatccat ttctagcttc ttgcctggcc cctgaagctg tccctgagcc actgtgccag
     2161 tctgtgtgcc cgttgctctt gtcccaggca ttcttgcaat tctggcaggg tgtcaactgg
     2221 accagggtta gggaggaggg cagagtctga ggctggggcc aagttggggg tggggagctt
     2281 gtcgggaaca ggtgttgggc agggcagctc tcaggctggc aatgcgggca ggctgctctg
     2341 gctggcaatg tgtgttccca tgctgctggt gggcgctccc caggccctgg ctcttcctgg
     2401 acagcaggca aaccgcaccg gaggcctctt tgcttgtccc ctgagcctag aggagacaga
     2461 ttgctacaga gtggacattg acaggggagc taacgtgcag aaggagagca aggagaacca
     2521 atggctggga gtcagtgtcc ggagccaggg gccagggggc aagattgtta cgtgtgcaca
     2581 ccgatatgag tctcgacaga gagtggacca ggctttggag actcgggatg tgattggccg
     2641 ctgctttgtg ctaagccagg acctggccat ccgtgatgag ctggatggtg gggagtggaa
     2701 gttctgtgag gggcgccccc agggccatga acagtttggg ttctgtcagc agggcacagc
     2761 tgccaccttc tcccctgaca gtcactacct cgtctttggg gctccaggaa cctataactg
     2821 gaagggcacg gccagggtgg agctctgtgc gcagggctcg ccggacctgg cacacctgga
     2881 tgacgggccc tacgaggcgg ggggcgagaa ggagcaagac ccccgcctca tcccggtccc
     2941 tgccaacagc taccttggtt tctccatcga ttctgggaag ggtcttatgc gctcagaaga
     3001 gctgagtttt gtggcagggg ccccacgtgc caaccacaaa ggggctgtgg tcattctgcg
     3061 caaggatagc gccagccgct tgatacctga ggttgtgctg tctggggagc gcctgacctc
     3121 tggctttggc tactcactgg ctgtgactga tctcaacaat gatggctggg cagacctgat
     3181 tgtgggtgcc ccctacttct ttgaacgcca agaagagctg ggaggtgctg tgtatgtgta
     3241 catgaaccag ggtggccatt gggcagatat ctctcctctc cgaatctgtg gctcccctga
     3301 ttccatgttt gggatcagtt tggctgtatt gggggacctc aaccaagatg gcttcccaga
     3361 cattgccgtg ggagctccct ttgacggaga tgggaaggtc tttatctacc atgggagcag
     3421 ccttggggtg gttgtcaaac cttcacaggt gctggagggc gaggcggtgg gtatcaagag
     3481 ctttggttac tccctgtctg gtggcctgga tgtggatgga aatcactacc cagacctgct
     3541 tgtgggctcc ctggctgata ccgctgctct gttcagggcc agacctgttc tacatgtctc
     3601 ccaagagatc ttcattgacc ccagagccat cgatctggaa caacccaact gtgccgatgg
     3661 acgcttggtc tgtgtggaca taaagatctg tttcagctat gtcgctgtgc ccagcagcta
     3721 cagccctagt gtggccttag attatatgtt agatggggac acagaccgga ggctccgggg
     3781 ccaggttcca cgtgtgacgt ttctgagccg aggcctggat gacctcaggc atcagtcctc
     3841 cggcaccgtg tggctgaagc accaacatga ccgagtctgt ggagatactg tgttccagct
     3901 gcaggaaaac gtcaaagaca agctacgggc cattgtggtg accctgtcat atggtctccg
     3961 aacccctcca ttagggaggc aagcacctgg ccaggagctc cccactgtgg ctcccatcct
     4021 caatgctcac cagcccagca cccagaggac tgagatccac tttctgaagc aaggctgcgg
     4081 tgaagataag atctgtcaga gcaacctcca gctcgagcgg taccagttct gttccaggat
     4141 cagcgacaca gagttccagg ctctgcccat ggatctggat ggaaggaccg ccctgttcgc
     4201 attgagtggg cagccgttca taggcctgga actgacagtc accaacctgc cctctgaccc
     4261 tgcccggcct caggcagatg gggatgatgc tcatgaagca cagctcttgg tcactctccc
     4321 agcctctcta cggtactcag gagtccgtgc tctggactct gtggagaagc cgctctgcct
     4381 gtccaatgac agcgcctctc atgtcgagtg tgagctgggg aaccctatga agagaggcgc
     4441 tcaggtcact ttttacctca tcctcagcac ctctgggatc actattgaga ccacagagct
     4501 ggaggtgaaa ttgctgttag ccacgatcag tgagcaggag ctggatccgg tctccgttcg
     4561 ggctcatgtc ttcattgaat tgccactgtc catttcaggg gtggccactc cccagcaact
     4621 cttcttctct ggcgaggtga agggcgaaag tgccatgcga tctgagaggg acgtgggcag
     4681 caaagtcaag tatgaggtca cggtctccaa tcaaggccag tctctcaata ctctgggctc
     4741 tgcgttcctc aacatcatgt ggccccacga gatcgccaat ggaaagtggc tgctgtaccc
     4801 catgcgggta gagctggagg gcggacaggg gcctggcaag agagggatct gttccccaag
     4861 acccaacatc ctccagctgg atgtggacag cagggatagg aggcggcgag agctggggca
     4921 gccggagccg caggagcctc cagagaaggt ggagcctagc acatcctggt ggccagtgtc
     4981 ctctgctgag aagagaaacg tgactctgga ctgcgcccag ggcacggcca agtgtgtggt
     5041 gttcagctgc ccactctaca gctttgatcg tgcagccgtg cttcacgtct ggggccgcct
     5101 ctggaacagc acctttctgg aggagtacat ggccgtgaaa tccctggaag tgatcgtccg
     5161 agccaacatc acagtgaaat cctccattaa gaacttgttg ctcagagatg catccacagt
     5221 gattccagtg atggtgtact tggaccccat ggccgtggtt gtggaaggag tcccctggtg
     5281 ggtcatcctc ctggcagtgc tggctgggct gttagtcctg gccttgctgg tactgctgct
     5341 gtggaagctg ggattcttca agcgggcgaa gcaccccgag gccaccgtgc cccagtacca
     5401 cgcagtgaag atccctcggg aagaccgaca gcagttcaag gaggagaaga caggcaccat
     5461 ccagaggagt aactggggca actcccagtg ggagggctcc gacgcacacc ccatcttggc
     5521 tgccgactgg catcctgagc tgggtcctga tggacatccg gtgccagcca ctgcctaaca
     5581 tctgctgtcc caagcccagc ccgtgggttc cttccgccct tttcccaaga tggctccttg
     5641 ggatggagat agtggagtaa gttgctagca tcacgttgag atatggcagg ctctgctttc
     5701 tcaggagcac agatctttct cccaccagga gaaccacccc tccatcttcc ccatacaatg
     5761 ctgtgagacg agggggcatg gctggaaggg caggcatgtc ctgatacagg gtggggagaa
     5821 ggggttctga gctccctctc acccaccctg taaaacctgt cttccccaaa gtgccttaga
     5881 cagagggtca gggaagagac tgtgtcactg tctcagggcc ctttactccc aagtctcccc
     5941 tgccctctgg ccttactgtg ctgtaccagt ccagtggttt tgtctattta ttaaaaagta
     6001 tttgacaata aaa
//
