LOCUS       NM_001417641            1644 bp    mRNA    linear   ROD 07-MAY-2024
DEFINITION  Mus musculus ISY1 splicing factor homolog (Isy1), transcript
            variant 1, mRNA.
ACCESSION   NM_001417641
VERSION     NM_001417641.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Bedogni,F. and Hevner,R.F.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1644)
  AUTHORS   Okazaki,N., F-Kikuno,R., Ohara,R., Inamoto,S., Koseki,H.,
            Hiraoka,S., Saga,Y., Seino,S., Nishimura,M., Kaisho,T., Hoshino,K.,
            Kitamura,H., Nagase,T., Ohara,O. and Koga,H.
  TITLE     Prediction of the coding sequences of mouse homologues of KIAA
            gene: IV. The complete nucleotide sequences of 500 mouse
            KIAA-homologous cDNAs identified by screening of terminal sequences
            of cDNA clones randomly sampled from size-fractionated libraries
  JOURNAL   DNA Res 11 (3), 205-218 (2004)
   PUBMED   15368895
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC158626.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13422597.89688.1,
                                           SRR17253011.5713620.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164134, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-98                AC158626.6         24709-24806
            99-121              AC158626.6         27700-27722
            122-173             AC158626.6         28456-28507
            174-239             AC158626.6         28957-29022
            240-324             AC158626.6         29724-29808
            325-437             AC158626.6         35754-35866
            438-555             AC158626.6         37962-38079
            556-678             AC158626.6         40988-41110
            679-800             AC158626.6         41821-41942
            801-887             AC158626.6         43807-43893
            888-1644            AC158626.6         44247-45003
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 39.13 cM"
     gene            1..1644
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /note="ISY1 splicing factor homolog"
                     /db_xref="GeneID:57905"
                     /db_xref="MGI:MGI:1923310"
     exon            1..98
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            99..121
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            122..173
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            174..239
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            240..324
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            325..437
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            438..555
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            556..678
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            679..800
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            801..887
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            888..1644
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      1618..1623
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      1644
                     /gene="Isy1"
                     /gene_synonym="5830446M03Rik"
                     /note="major polyA site"
ORIGIN      
        1 gtccgctgtt ttccgttccc gcgtctgcct gccttgttcc gggcgcctga gcacgttgcg
       61 ttgcagagcg gcgccagggc gccctcgccg gcaccatggc ccgaaatgca gaaaaagcca
      121 tgactgccct ggcgaggttt cgtcaagctc agctggaaga gggaaaagtc aaggaacgga
      181 gacccttcct tgcttctgaa tgtactgagt tgccgaaagc ggagaagtgg agacggcaga
      241 tatgttcaaa aatgatgaga tgtgcctgtt gctttccaca gatcattggc gagatctcaa
      301 aaaaggttgc tcagattcag aatgctggct taggggaatt ccgaattcgg gacctgaatg
      361 acgaaattaa caagctgctg agggagaaag gacactggga ggtccgcatc aaggagctgg
      421 gcggtcctga ttatggaaaa gttggcccca agatgctgga tcatgaaggt aaagaagtcc
      481 caggaaatcg aggttacaag tactttgggg cagcaaaaga tttgcctggt gtcagagagc
      541 tatttgagaa agaacccctt cctcctccca gaaagacacg tgctgagctc atgaaggcca
      601 tcgattttga gtactatggt tacctggatg aagatgatgg agttattgtg cccttggaac
      661 aagagtatga gaagaaactc agagctgagc tggtggaaaa atggaaggca gagagagaag
      721 ctcggctggc aaggggagaa aaggaagagg aggaggagga ggaagaggag atcaacatct
      781 atgctgtcac ggaggaggag tctgatgagg aaggcaacca ggagaaggcc ggggaagatg
      841 gtcagcagaa gttcattgct catgtgccgg tgccatctca gcaggagatt gaggaggcgc
      901 ttgtacggag gaagaaaatg gaactgctcc agaaatatgc aagtgagacc ctgcaggcac
      961 agagtgaaga agccaagcga ctcctggggt actaggctga gccagagccc ttcttgaact
     1021 ctggaagacc tggtgggtgt gcttggtaca ccatggcacg ccatcctcat agctgccctg
     1081 ggctgtggct aggctgcctg gcgctggaag gcctgtgcct ttctcaccct tcagcttacc
     1141 tccatttctg gaatgtgagc tggcctgata gtagggccct gtcccttccc aggaagctgc
     1201 caggtactga atgctttagt agccatcgcc tttgtacaga tgcctttgct accgtgtgca
     1261 tccattcatt tttgtcttgg aatgtgtaaa atctgttctc tgaaaattta ctttgcccta
     1321 tactctgctt ttgggaatca agaaggatca aactagtagc caattttcaa aaatacataa
     1381 tttttattca aatcacatct aaatttagag acacatcttc tctgggagac tgagatggtg
     1441 tatcgaccct gagatggaat tccatggtta gtgctggagc catccctgcg tctgggcact
     1501 gcttaccttg ccatgatccc cctctgggag agccatttca ccttctcctg tcctgtggac
     1561 aggagttttg agttagcgac tttattttta taacttgttt cagagaaagg tacttttatt
     1621 aaaggttttt aataagaaag gaaa
//
