LOCUS       NM_001164235            2162 bp    mRNA    linear   ROD 06-AUG-2023
DEFINITION  Mus musculus IQ motif containing M (Iqcm), transcript variant 1,
            mRNA.
ACCESSION   NM_001164235
VERSION     NM_001164235.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Georgas K, Rumballe B, Valerius MT, Chiu HS, Thiagarajan RD,
            Lesieur E, Aronow BJ, Brunskill EW, Combes AN, Tang D, Taylor D,
            Grimmond SM, Potter SS, McMahon AP and Little MH.
  TITLE     Analysis of early nephron patterning reveals a role for distal RV
            proliferation in fusion to the ureteric tip via a cap
            mesenchyme-derived connecting segment
  JOURNAL   Dev Biol 332 (2), 273-286 (2009)
   PUBMED   19501082
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Choi E, Lee J, Oh J, Park I, Han C, Yi C, Kim DH, Cho BN, Eddy EM
            and Cho C.
  TITLE     Integrative characterization of germ cell-specific genes from mouse
            spermatocyte UniGene library
  JOURNAL   BMC Genomics 8, 256 (2007)
   PUBMED   17662146
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC118474.10, AC125177.4, AC118721.9, AC119980.7 and AC117750.7.
            
            Transcript Variant: This variant (1) represents the longer
            transcript. Both variants 1 and 2 encode the same protein.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC117767.1, SRR5189685.196783.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-313               AC118474.10        142370-142682
            314-431             AC118474.10        156285-156402
            432-513             AC125177.4         65594-65675         c
            514-596             AC125177.4         44563-44645         c
            597-861             AC125177.4         42524-42788         c
            862-952             AC118721.9         134440-134530       c
            953-1032            AC118721.9         129758-129837       c
            1033-1148           AC118721.9         90052-90167         c
            1149-1207           AC118721.9         44723-44781         c
            1208-1403           AC118721.9         13093-13288         c
            1404-1548           AC118721.9         6067-6211           c
            1549-1683           AC119980.7         27311-27445
            1684-1845           AC117750.7         71306-71467
            1846-2162           AC117750.7         167001-167317
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="8"
                     /map="8 35.65 cM"
     gene            1..2162
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /note="IQ motif containing M"
                     /db_xref="GeneID:71831"
                     /db_xref="MGI:MGI:1919081"
     exon            1..313
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            314..431
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            432..513
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             480..1949
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /codon_start=1
                     /product="IQ domain-containing protein M"
                     /protein_id="NP_001157707.1"
                     /db_xref="CCDS:CCDS52603.1"
                     /db_xref="GeneID:71831"
                     /db_xref="MGI:MGI:1919081"
                     /translation="MAPAEAIPEGVGPVLETTQQDFLQEAKSLIAQHHKRLNENKAQG
                     TSIDVFKNKHQKPKTVKFIPFEVKKSEILNVVQEHRLVLKSISYPRDTSKCTALIEAS
                     QQISFKEPHVSNIKEKCHPVDLLKEEKVKLGKIMNDIESVSKQMEMEKEMHLRKSRML
                     EPFHSHMSLPLHNLASSLGLLKELADRTLYDWRSAALIRSSYLPHGSAQSLSESSVTF
                     KNYYKRPIRKKDLQPIKKELKTEKRSKTIAKSDKIDSKVKRIGPHIEIFQLFQRRNKT
                     IFTKRIIKLVTTVQAFIRGWLERKRLQRIKSKVSYHGPNLKTVIKMYQCLIHRVRHRL
                     GLWRTRQIIYLGELEEWMDRKKFYETMFAKREDWQGLERSDLLKYFNDCGHFPTQTQI
                     DEYWDLLHRYGQGRYSEVIKKSNAIELLFTLYPPQGARVNISTRLKSTWLRPLVDGEE
                     GYKYLVNGHPILKRANIRTVGKLVARSIRERKMRQFYKT"
     exon            514..596
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            597..861
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            862..952
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            953..1032
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1033..1148
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1149..1207
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1403
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1404..1548
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1683
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1684..1845
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..2162
                     /gene="Iqcm"
                     /gene_synonym="1700007B14Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atccaaggga accttctggc gattgcccag gagatttacc aatcctggcg gctcacgggg
       61 ccaggaggtc ctggccctca gaggtgctgc agcaagggtc ctgctgcccc aaagagaagt
      121 aggctagtga attcacagtg ttgtgaggag tgagaggaga gggcactaat ggggcctggt
      181 agggcaactg tgattgggag agtgccctgg gggcggagct aaggagacaa caagggtggg
      241 gctagtgtga ctccacaact actaaagagg cttgaaggtt ctctagccac agaaggtgac
      301 cctgagcctg aagctctccc aaggggaaag aagaaagatc aacaatggca gaagtctgtg
      361 gcagcatagg cgcagaaaga gcttgctttg tgctcaggag agaacactgc atctcagcct
      421 cctggtttta gtggtgttca acattcaaaa aaggataacc ccagctctac ctgcccatca
      481 tggcacctgc agaagctata cctgaaggag taggccctgt attggaaacc acccagcaag
      541 attttttgca agaagcaaaa tctcttattg cccaacatca caagagatta aatgagaata
      601 aggctcaagg aacgtctata gatgtcttta aaaataaaca ccaaaaaccg aaaactgtca
      661 agttcatacc ttttgaggtt aagaaaagtg aaattcttaa tgtagttcaa gaacatcggt
      721 tggtactcaa aagcatcagc tatcccaggg acacttccaa gtgcacagct ttaattgagg
      781 cctcacagca gatttccttc aaggagccac atgtgtcgaa tataaaagag aagtgccacc
      841 ctgtagatct tttaaaagaa gaaaaagtta aactgggtaa aataatgaat gatattgaat
      901 ccgtgagtaa gcaaatggag atggagaagg agatgcatct caggaagtcc agaatgttgg
      961 aacccttcca ttcccacatg agcttgcctt tgcataatct ggcctcttct ctgggacttc
     1021 tgaaggaact tgctgacagg acgctttatg attggaggag cgctgcattg ataagatctt
     1081 cctatttgcc tcatggatct gctcaaagtt tatcagagtc ctcagtgaca tttaagaatt
     1141 attataagag acccattagg aagaaagatc tgcaacctat aaagaaagaa ctgaagacag
     1201 aaaaaaggtc aaagactatt gcaaagtctg ataaaataga cagcaaagtt aaaagaattg
     1261 gaccacacat agaaattttc caactattcc agcgaagaaa caagaccata tttactaaaa
     1321 gaattattaa actggtcacc actgtgcaag catttatcag gggatggctt gagcgcaaaa
     1381 gacttcaacg aataaagagc aaggtttcgt atcatgggcc aaatttgaaa acagttataa
     1441 aaatgtatca gtgcttaatc caccgtgtta gacaccgact tggtctttgg aggacaagac
     1501 agattatata ccttggagag ttagaagaat ggatggatag aaaaaagttc tatgaaacca
     1561 tgtttgccaa gagagaagac tggcaaggcc tagaaagaag tgatctgctg aaatacttca
     1621 acgactgtgg tcatttcccc acccagaccc agatcgatga gtactgggac ctgctccaca
     1681 gatatggtca aggaagatat tctgaagtaa tcaaaaagtc caatgctatt gaactattat
     1741 ttacactcta ccctcctcaa ggtgccagag tgaacattag cacaagacta aagtccacat
     1801 ggctgagacc cttggtggat ggggaagaag gctataagta cttagtgaat ggacatccaa
     1861 tactcaagag agctaacatc cggactgttg gcaagttggt ggctcgatcc ataagagaaa
     1921 gaaaaatgag acaattttat aaaacatgag aactggaata aatttttcag cacagtgctc
     1981 cattaaatag ttgaacttat ctcctcagaa atgcatatta gtaatgaaca cagaatgatt
     2041 tgctattgac aggataaagg gtgaaatctt tggatgttga caagttagtt catcattgat
     2101 aagtaagttt ggatgagcgg tctttatctt cctcattaaa catctgctaa tcatgacaca
     2161 aa
//
