LOCUS       NM_001311098            3678 bp    mRNA    linear   ROD 30-APR-2024
DEFINITION  Mus musculus IQ motif containing H (Iqch), transcript variant 1,
            mRNA.
ACCESSION   NM_001311098 XM_006511552
VERSION     NM_001311098.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
            Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
            Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
            Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
            Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
            Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
            Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
            Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
            Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
            Jackson,S.P. and Balmus,G.
  CONSRTM   Sanger Mouse Genetics Project
  TITLE     Genetic determinants of micronucleus formation in vivo
  JOURNAL   Nature 627 (8002), 130-136 (2024)
   PUBMED   38355793
REFERENCE   2  (bases 1 to 3678)
  AUTHORS   Navarrete-Lopez,P., Lombo,M., Maroto,M., Pericuesta,E.,
            Fernandez-Gonzalez,R., Ramos-Ibeas,P., Parra,M.T., Viera,A.,
            Suja,J.A. and Gutierrez-Adan,A.
  TITLE     An ancient testis-specific IQ motif-containing H gene regulates
            specific transcript isoform expression during spermatogenesis
  JOURNAL   Development 150 (7) (2023)
   PUBMED   36975404
REFERENCE   3  (bases 1 to 3678)
  AUTHORS   Yin,L.L., Li,J.M., Zhou,Z.M. and Sha,J.H.
  TITLE     Identification of a novel testis-specific gene and its potential
            roles in testis development/spermatogenesis
  JOURNAL   Asian J Androl 7 (2), 127-137 (2005)
   PUBMED   15897968
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BB610295.1, AK019535.1, AK029502.1 and AC122057.3.
            
            On Jul 24, 2015 this sequence version replaced XM_006511552.2.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (1).
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK019535.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN00849374,
                                           SAMN00849375 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-13                BB610295.1         1-13
            14-256              AK019535.1         1-243
            257-257             AK029502.1         248-248
            258-1399            AK019535.1         245-1386
            1400-1400           AK029502.1         1391-1391
            1401-1562           AK019535.1         1388-1549
            1563-1563           AK029502.1         1554-1554
            1564-3670           AK019535.1         1551-3657
            3671-3678           AC122057.3         105944-105951
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="9"
                     /map="9 34.08 cM"
     gene            1..3678
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /note="IQ motif containing H"
                     /db_xref="GeneID:78250"
                     /db_xref="MGI:MGI:1925500"
     exon            1..127
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            128..250
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            251..342
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            343..454
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            455..571
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            572..692
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            693..821
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            822..901
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            902..940
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1492
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1493..1559
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1560..1643
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1819
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1820..2092
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2093..2284
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2285..2405
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2406..2692
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2693..2863
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2864..2986
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            2987..3048
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3049..3157
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            3158..3678
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /inference="alignment:Splign:2.1.0"
     regulatory      3446..3451
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /note="hexamer: ATTAAA"
     polyA_site      3467
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
     regulatory      3652..3657
                     /regulatory_class="polyA_signal_sequence"
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /note="hexamer: AATAAA"
     polyA_site      3672
                     /gene="Iqch"
                     /gene_synonym="4921504K03Rik"
                     /note="major polyA site"
ORIGIN      
        1 gggtgcccgc accatctagg agcgctccgc aggaggccat acctccggag cctagtgtct
       61 tctgccctcc ttagtcatgg cgcaggccca ggaggacagc gaccccattg gatccatcct
      121 aatccaggtt catgaggacc ttcatcagtt aaaggaaaaa ttagtaaaat tctcagccga
      181 ggagacaagg agcactctag acattcaaaa tcttgagaca gcaatccaaa ggactgaaat
      241 ggggttaaag attcacatcg acaagtatct aggtgttgta aaccaggagg tgttaatggc
      301 tcctgtgaag aaaagcttgg aatcccctgt cacttccaaa tggtcgattc caactgtaat
      361 tgaccagaaa tcctttattt tccccatgga ttctgatttt tggcgacctc aaaagcatcg
      421 cggttcattg ctacacggcc ttagaagagc aaagccaaag atacagttga ctacgaaggt
      481 catgcaggac cctgagaaca agcaccacag ggctgctgta actgctagct atgggatcag
      541 tttgccacat attaaccaga ggaaagccca ggataaggtt cagcggttaa taaaagggtc
      601 cacgatctcc aacctcacag ttctgccacc ctctcatcgc actgaccccc attttatccc
      661 catacctgtc ttgcagaagg atgccagtaa aggcgtctta agtatgattg agcgagggct
      721 gatcccccca acagcgagga ttacctttca gaacccaccc attaaacccc aagcacttcc
      781 tctgcacagt tttgatgagc atcgtaaggt acccatggaa gcctcctttc ctctcgctct
      841 caagccacgc ccagttcctg aagaagtgga ggagccttct caccagatag aaatacccaa
      901 ggggagagcc aaaaggtcaa gaggaccgct cagaagaaag ggcatgaaga ttaggacacc
      961 gtctaagact aggaaatcac catgggatta tatattttct gtttacaacg gctgtgtaga
     1021 caggacagcc ccagacttct tagcattcaa atcacgcttc aaattaatct gggggagtat
     1081 tttttctttc ctggaacaaa ttgagaaatt tctcaaggac tatgcaatat ctgaagccaa
     1141 aataaaaggg aagagtctgg tgtccctgct tccagagttt gagctgaaga acaaattaac
     1201 cagaaatgat gttctggctg tgttagagaa cccagttcac attcagatgc tgttaaacct
     1261 tccgggacag aggtacaagg gccaagatgg aaaggcagaa gctgccacca agatccaagc
     1321 cacgtggaaa agttacaagg caagatcttc tttcatttct tatcgccaga agaaatgggc
     1381 ctcaggtgtg atcgccctgg cgtggctttt acattgccac aggacaagac taaagaggat
     1441 agtgaaggaa tcccgacaga gacacctgga gaacttccgc attcgagccc agcatctggc
     1501 agccaactgg agtcgcatca ggacctccag gaggactatt atccatatac catcattagg
     1561 gtactcccag tatgtgagaa aacacatttt tgatttggac gtagaacaga acatgcagtt
     1621 ggggaggctg tgcgacatca tagatgccaa cgtcaatgtc atctacatct gttcccatcc
     1681 tatgacggat gagttaaagc tgtactacag gaaactcctg agtctacaag cagctgtcaa
     1741 aacggggtac tacggggatc ggactgacct gcagaacagg ttcagaatta tcacccctga
     1801 agctgtaaac gtcttcacta agcatcacat gtgcctggcc actcacctga tgtacagtcc
     1861 caaggcaatc aaaagaataa aaaatctcat ccgaggagaa gaggcctaca tcgtgggcgg
     1921 gatcctccac agagacgact tagctgtggc cgatatgctg aatgtcccca tcctgggctc
     1981 agagcctgag ctggttcacc tgtacagtgc caagtctgga agcaagcgga tctttgataa
     2041 tgctaatgtg ccaatgcctc ctggaatata tgacatctat acttaccaac agatgataga
     2101 acagttgagc cagttggtga ctgataacct gggaatccga cgctgggtct ttaaaatgaa
     2161 cacggaattt ggaggaaatg ggacagcatt ttgtgacatt ccttcccatc tacagtgcta
     2221 caactgggtg ctgaaggaaa gaaacagatt tggccatgag gactggaaga agaagtgggc
     2281 acaagagtca gctctggtga agatctccga ggagctggcg ggcattttag cacagcacgt
     2341 acagctagtc aatgagaaac ggttcccgac gtggaggaaa ttcctccaca tgtttctcac
     2401 tcaaggtggc gtgattgaag catacccacc tgcagacagc gtcaccaacc tcacagtaga
     2461 catgctgata gaacctgatg gagaagtcag ggtgctgtca atgggagacc agcttcatgc
     2521 tgatggcccc tttatttctt ctggtaccac catgcctcag acctcagtgg atccccaagt
     2581 tctcaattct ttgtgcctcc aaattggaaa tatctgcaaa gagaaagatg tggttggtta
     2641 tttttctata gatctggtga ctttcattga tccgagcacc ttagagcagc aggtatggac
     2701 aacaggcctc aacctctcat acagtgacca gctagccatg acgcagctca ccctctacct
     2761 gacaaatggt catctgaatt gtagtctgag caccctggaa gtgccccgtt ttactgaaga
     2821 ttcagaaagg gaaaggaagc gccttagcat ccaggcagag ctggcaccag aaaccagtcg
     2881 ctatgcagtg atgtccaccc agctgaagca tgacaatctc tcactaatct tctattacgt
     2941 ttttctccag atgtgtaagg cccatggcat tggctatgac cttgaggaca gacaaggaac
     3001 tgtttttata ttatatgaat ctctgaagag atacaagttg ggcatgttaa caatcggtgt
     3061 ggatctccag ggggtcctca tgacctttgc tcgcaatctc ttcatcatcc atcaagaaat
     3121 atcagcacct gatatgcaag gcgagaccaa ttttaagact accattgatg atattgaaac
     3181 cattttagga gtaacagaag aaaataaaat gatatttgta agagaaaaac agagcaaaga
     3241 ggaggaagat aacctttatg aacctgttga aatacactca gaaatagtct gactttggat
     3301 acctgtctag agcaagaaag aatgtttgct ttgcaattag tataaaagtg gggaagttag
     3361 tttgctttgt ttgccaagag ataaatcaga acaaattgta atgtaatctt taaaatcttg
     3421 tttattatgc aacgttattt tactcattaa atttaaacct accggtgttt tcggtgtgaa
     3481 tgctaagaac cccttcctcc tcccaaagta accacggggg ggggggggaa gtccactact
     3541 gcatccgctt ctctgtaaat ttgtaactgt atgagtcact cttgctttct tgcgttttac
     3601 aagttttctc ctgcttccaa aagccactta gcttctgcat ttaaaacacc gaataaacca
     3661 ggatgaccac tatttgtc
//
